Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1743593 91.5 1e-13 seq164858 91.5 1e-13 seq752483 86.0 5e-12 seq774391 84.2 2e-11 seq756917 82.4 6e-11 seq750497 82.4 6e-11 seq184930 82.4 6e-11 seq8128 82.4 6e-11 >seq1743593 Length=9171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||| ||||| ||| | || ||| || Sbjct 1542 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCA 1483 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 1482 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1423 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||||| ||||| | || ||||||| |||||| Sbjct 1422 CAGAGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTGGCGGATTACAAC 1363 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | ||| ||||| Sbjct 1362 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 1333 >seq164858 Length=2471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| | || |||| | Sbjct 2127 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 2068 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2067 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2008 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| ||||||| | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 2007 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGACTACAAC 1948 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 1947 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 1918 >seq752483 Length=2742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| || || ||| |||| |||| | Sbjct 756 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTTGAGGGTTCG 815 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| || || || ||| | || ||| || Sbjct 816 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAA 875 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | ||| |||| || |||||| Sbjct 876 CAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACATTGGCCGATTACAAC 935 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 936 ATCCAAAAGGAGTCTAC 952 >seq774391 Length=5162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || ||||| || ||| | || ||||| ||||| ||| |||| | Sbjct 4806 GTTTACAGATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTTG 4865 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || || || || | | | | || || ||||| ||||| || ||| | || Sbjct 4866 AGTCTTCTGACACGATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTC 4925 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 ||| |||||| | || || | ||| || || || |||||||| | | || |||| | Sbjct 4926 CGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACCTTGGCTG 4985 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||| || |||||||| || | ||| ||||| Sbjct 4986 ACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTG 5023 >seq756917 Length=3581 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || || || ||||| ||||| || | || |||| | Sbjct 94 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCA 153 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 154 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 213 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 214 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTGGCAGACTACAAC 273 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | || ||||| Sbjct 274 ATCCAGAAGGAGTCTACCCTTCATCTGGTG 303 >seq750497 Length=14261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || || || ||||| ||| | || ||| || Sbjct 11062 ATGCAGATTTTTGTTAAGACCCTCACCGGGAAGACCATCACCCTGGAGGTTGAGTCTTCT 11003 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 11002 GACACCATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 10943 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 10942 CAGCGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 10883 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || || | ||| ||||| Sbjct 10882 ATCCAGAAGGAATCCACCCTTCACTTGGTG 10853 >seq184930 Length=1266 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| || || ||| | || ||| || Sbjct 322 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACTATCACCTTGGAGGTTGAGTCTTCT 381 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 382 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 441 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||| | | || |||||||||||||| Sbjct 442 CAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 501 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| | ||| ||||| Sbjct 502 ATCCAGAAGGAGTCCACGCTTCACTTGGTG 531 >seq8128 Length=3827 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || ||||| |||||||| | || ||| || Sbjct 3292 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACTCTGGAGGTCGAGTCTTCG 3351 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || || ||| | || ||| ||| Sbjct 3352 GATACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 3411 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | |||||| || ||||| ||||||| || ||||||| |||||| Sbjct 3412 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCGGATTACAAC 3471 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | || ||||| Sbjct 3472 ATTCAGAAGGAGTCTACTCTCCATCTGGTG 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390036894851380