Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq752483 131 1e-25 seq1743593 129 4e-25 seq750497 125 5e-24 seq763663 118 8e-22 seq184930 118 8e-22 seq41905 105 5e-18 seq36911 105 5e-18 seq5142 87.8 1e-12 >seq752483 Length=2742 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||| |||||||||||||| ||||||||||| || | ||| || | Sbjct 1654 CGCAGGACAAGATGAAGAGTGGATTCTTTTTGGATGTTATAATCTGCCAAGGTACGCCCA 1595 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | || | || |||||||| || ||||| ||||| ||| Sbjct 1594 TCCTCCAGCTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTG 1535 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || |||||||| || Sbjct 1534 TCCTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGAGTAATG 1475 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || ||||| |||||||| Sbjct 1474 GTCTTTCCAGTTAATGTCTTGACAAAAATCTGCAT 1440 >seq1743593 Length=9171 Score = 129 bits (142), Expect = 4e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || ||||| ||||| || ||||||||||| |||| ||||| Sbjct 1555 ACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTGCGCCC 1614 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| ||| | || | || || || |||||||| |||||||| || Sbjct 1615 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGGTCCGGCGGGATACCCTCCTT 1674 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | ||| |||||| | || | ||||||||| || || ||||| || || Sbjct 1675 ATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAAGACTCGACCTCAAGTGTGAT 1734 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || ||||| |||||||| Sbjct 1735 GGTCTTGCCGGTGAGCGTCTTCACAAAGATCTGCAT 1770 >seq750497 Length=14261 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| || || || ||||| || || || ||||| |||||||||| ||||||| ||| Sbjct 11079 AGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGACCATCC 11138 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||| ||| | |||| | |||||| || || ||||| ||||| ||||| Sbjct 11139 TCAAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 11198 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||| | || | ||||||||| || || || || || || || Sbjct 11199 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTGATTGTC 11258 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || |||||||||||||| Sbjct 11259 TTCCCCGTGAGGGTCTTGACAAATATCTGCAT 11290 >seq763663 Length=3499 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || |||||||| || || ||||| || || |||| |||||| Sbjct 2941 CGGAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCG 3000 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| ||||||||||| ||||| ||| Sbjct 3001 TCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTG 3060 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| | || | ||||| || || || || ||||| ||| Sbjct 3061 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACCTCCAGAGTGATA 3120 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 3121 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 3155 >seq184930 Length=1266 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| ||||||||||| || || || ||||| || ||||| | |||||| | Sbjct 536 CGGAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCA 477 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | |||| | ||||| ||||| || || ||||| ||| Sbjct 476 TCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 417 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||||||| || || || | || ||| Sbjct 416 TCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCAACCTCCAAGGTGATA 357 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || ||||| |||||||| Sbjct 356 GTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 322 >seq41905 Length=7320 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| ||||| || || || ||||| || || || | |||||| Sbjct 2978 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 3037 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || ||||| | |||| | ||||| ||||| || || ||||| || Sbjct 3038 ATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTT 3097 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | |||||||| || || || | || || Sbjct 3098 GTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAGGTGAT 3157 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || | ||| || |||||||||||||| Sbjct 3158 AGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 3193 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || || ||||| || || ||||| || || || | |||||| | Sbjct 3207 CGAAGCACCAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA 3266 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | || | | ||||| ||||| || || ||||| ||| Sbjct 3267 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 3326 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || || | || | |||||||| || || || | ||| || Sbjct 3327 TCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAAGTGATT 3386 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || |||||||||||||| Sbjct 3387 GTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 3421 >seq36911 Length=12065 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || || || ||||||||||| |||| ||| || ||| || || || Sbjct 7780 TGGAGGGTAGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCATCCTCCAGCTGC 7839 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | || | | ||||| || || ||||| ||||| ||||| || | || Sbjct 7840 TTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 7899 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| | || | ||||| || ||| || ||||| || || || ||||| || Sbjct 7900 GCCTTGACATTGTCAATGGTGTCGGAGGATTCCACCTCAAGTGTGATGGTCTTGCCGGTG 7959 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || ||||| |||||||| Sbjct 7960 AGGGTCTTGACAAAGATCTGCAT 7982 >seq5142 Length=9133 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || || || |||||||| ||||| || Sbjct 2088 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAATCAGC 2029 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | || || |||||| | || | ||||||||||| || || Sbjct 2028 TAATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGGG 1969 Query 29679 AATACCCTCTTTGTCTTG 29696 ||| ||||| ||||| || Sbjct 1968 AATGCCCTCCTTGTCCTG 1951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376681974497220