Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq45179 450 1e-121 seq57095 289 3e-73 seq155648 178 1e-39 seq213450 156 4e-33 seq856698 118 1e-21 seq761979 114 1e-20 seq352821 114 1e-20 seq36335 109 6e-19 seq79754 104 2e-17 seq159272 100 3e-16 >seq45179 Length=9647 Score = 450 bits (498), Expect = 1e-121 Identities = 544/738 (74%), Gaps = 2/738 (0%) Strand=Plus/Minus Query 159048 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTC 159107 ||| | || || || |||| |||||| || |||||||| || ||||| ||||| |||||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 159108 ATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGC 159166 ||| | ||||| |||||||| || || ||| || | | || || || ||||| || | Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTC 9510 Query 159167 GTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTC 159226 ||||||||||| |||||||||||||| || |||||||| || ||||| || || || Sbjct 9509 ATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATC 9450 Query 159227 CAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCT 159286 ||||||| || || ||| ||||| || || || ||||| | ||| | || ||| | Sbjct 9449 TGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTT 9390 Query 159287 ACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCT 159346 ||||| || || |||||||| | ||||| || ||||||||||||||||| || | | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 159347 AGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGA 159406 ||| | || || |||| ||||||||||| | || || ||||| || ||| ||||| Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 159407 TGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTC 159466 || || ||||| ||||| || ||| | ||||||||| || || |||||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 159467 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCG 159526 ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || || || Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 159527 GTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGG 159586 ||| | |||||||||||| | ||||| || || | ||| |||||| |||||| Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 159587 CATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGC 159646 | | |||| | ||||| || | ||||| || || || || || || ||| | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 159647 AGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACT 159706 ||| |||||||| |||||||| || ||||||||||| || |||||| | || || || | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 159707 ACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGT 159766 ||||| ||| ||||| || ||||| || |||||||| | || ||||| || || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 159767 TCTACCAAGAGGTAACGC 159784 ||||||| | || ||||| Sbjct 8909 TCTACCACGTGGAAACGC 8892 >seq57095 Length=8353 Score = 289 bits (320), Expect = 3e-73 Identities = 367/502 (73%), Gaps = 2/502 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||||| ||| | || ||| | || | || ||||||||||| | Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | || || || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| || || ||| |||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || ||||||||||| || ||||| |||| || ||||| | ||||| ||||| || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| ||||| ||||||||||| | ||||| |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || | | |||||||| ||||||||||||||| || ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | ||||||||||| ||||| |||||| || || || || || || ||||| | ||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | | || ||| | |||||||| || || |||| ||||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 157530 CTCTGGTACTTTTAACTATATG 157551 |||||||||||| |||| |||| Sbjct 26 CTCTGGTACTTTCAACTTTATG 5 Score = 122 bits (134), Expect = 9e-23 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 158787 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTA 158846 || |||||| | | |||| |||||||||||||| || |||||||| || | || | Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 158847 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 158906 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 158907 TATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTT-ACAGCAGCAGT 158965 ||||| |||||| | || | ||||||| | || ||| || |||||| || |||||||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279 Query 158966 TTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 159025 ||| || || || || | | | || ||| | |||| || ||||| || || || || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 159026 AGGGGATTT 159034 ||| ||||| Sbjct 8340 AGGAGATTT 8348 >seq155648 Length=2022 Score = 178 bits (196), Expect = 1e-39 Identities = 224/308 (73%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 159171 TCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGT 159230 |||||||| |||||| ||||||| ||| |||||||| || |||| || || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 159231 TGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAA 159290 ||||| || || ||| ||||| ||||| | ||||| | ||| | || ||| | ||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 159291 GGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGT 159350 || || || |||||||| | ||||| || ||||||||||||||||| || | |||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 159351 GGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGA 159410 | | || | || ||||||||||| | || || ||||| || ||| ||||| || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 159411 GAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATG 159470 || ||||| ||||| || ||| | ||||||||| || || |||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 159471 GTCACTGC 159478 |||||||| Sbjct 1722 GTCACTGC 1715 >seq213450 Length=3525 Score = 156 bits (172), Expect = 4e-33 Identities = 204/282 (72%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 157492 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 157551 |||||||| || || |||| ||||||| | || |||||||||||||| |||| |||| Sbjct 3247 GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 3306 Query 157552 CTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 157611 | || || ||| |||||||||| || ||||||||| || |||||| | || || ||| Sbjct 3307 ATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAGCT 3366 Query 157612 GGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTT 157671 || ||||||| || || | ||| ||||||||| | ||| | | | | || Sbjct 3367 GGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA--------TGGTTCCATGGTAGTTT 3418 Query 157672 GTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGA 157730 | || | ||||| ||||||| || || || | |||||||| || |||||||| || Sbjct 3419 GATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGA 3478 Query 157731 AGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCG 157772 |||||| || || || || ||||| || ||||| || || || Sbjct 3479 AGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 3520 >seq856698 Length=257 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 157894 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 157953 || |||||||| |||||||| || | ||||| |||| ||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 157954 GCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 158013 || ||| || | ||||| ||| |||||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 158014 AACTTCCCACTGGATCTTGCTGCTG 158038 |||||||| || || | ||||||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTG 147 >seq761979 Length=10221 Score = 114 bits (126), Expect = 1e-20 Identities = 186/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 157175 TTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCA 157234 || |||| || | ||||| |||| ||| || ||||| | | |||| ||||| || | Sbjct 480 TTAATATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTA 421 Query 157235 TCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGG 157294 |||||||||| || ||||| |||| | | ||| | ||||| ||||| || || Sbjct 420 TCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAA 361 Query 157295 AAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTC 157354 ||| ||||| ||||||||||| | ||||| |||||||||| | || | | || | Sbjct 360 AAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTAC 301 Query 157355 ACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAG 157414 ||||| | | || | | |||||||| |||||| ||||||| || |||| | | Sbjct 300 ACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGG 241 Query 157415 GTATGCGCCCCTGGATCTGTGTTGCCTA 157442 |||||| || || || |||||| || Sbjct 240 GTATGCATCCTTGAATTGTTGTTGCATA 213 >seq352821 Length=202 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 159581 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 159640 ||||||| | |||| | ||||| || | ||||| || || || || || || || Sbjct 17 TATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAAT 76 Query 159641 CAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGA 159700 | | ||||| |||||||| ||||||||||| ||||||||||| || |||||| | || || Sbjct 77 CCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACGA 136 Query 159701 AGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGA 159760 || | ||||| ||| ||||| || ||||| || |||||||| | || ||||| || Sbjct 137 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 196 Query 159761 AGAAGT 159766 || || Sbjct 197 GGAGGT 202 >seq36335 Length=20465 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 157483 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 157542 || ||| | |||||||| || || |||| ||||| | | || ||||| |||||||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 157543 AACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTC 157602 |||| |||| | || ||||||||||||||||| || ||||||||||| ||||||||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 157603 GGCGT 157607 || || Sbjct 3401 GGTGT 3397 >seq79754 Length=5746 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 159417 GCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACT 159476 ||||| ||||| || ||| | ||||||||| || || |||||||| ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 159477 GCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCAT 159536 || ||||| || ||||| || ||||| | |||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 159537 TTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGA 159573 ||||||||| | ||||| | || | ||| |||||| Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq159272 Length=944 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 159169 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCA 159228 ||||||| || |||| | |||||| || |||||||| ||||||||||| || || Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 159229 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTAC 159288 ||||||| | || | ||||| | || || ||||| | ||| | || ||| | | Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCC 186 Query 159289 AAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTG 159336 |||| || || ||||||||| | ||||| || |||||||||||| ||| Sbjct 185 AAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTG 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532879394753600