Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq45179 448 6e-121 seq57095 269 3e-67 seq213450 158 1e-33 seq155648 152 6e-32 seq159272 114 2e-20 seq36335 109 7e-19 seq352821 107 2e-18 seq788035 96.9 4e-15 seq79754 89.7 6e-13 >seq45179 Length=9647 Score = 448 bits (496), Expect = 6e-121 Identities = 551/750 (73%), Gaps = 2/750 (0%) Strand=Plus/Minus Query 179203 CGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTA 179262 || ||||| ||| | || || ||||||| ||| || ||||||||||| || || || ||| Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 179263 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAA 179321 || || |||||| | || || |||||||| || || ||| || | | || ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAA 9519 Query 179322 TGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACT 179381 ||| || | || ||||||| ||||| || || ||| |||||| || || || ||||| Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 179382 TGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCT 179441 || ||||| |||||||||||||||| ||||| || || ||||| ||| ||||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 179442 ACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGC 179501 |||||||| ||||| || || || ||||| | ||||| ||||| |||||||||||||| Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 179502 AGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATT 179561 || | | || | |||||||| | ||||||||||||| ||| ||||| || || | Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 179562 GTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGA 179621 | ||| || || || ||||| || || || || || | || |||| || || Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 179622 GACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAG 179681 || ||||| ||||| || || ||||| |||||||| || ||||| || ||| | ||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 179682 CAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTC 179741 |||||| |||||||| || ||||||| ||| ||||| || |||| ||| | ||| | Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 179742 TTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGA 179801 | |||||||| | |||| | ||||| || | ||||| ||||| ||||| || || Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 179802 GATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAA 179861 ||| | ||||| ||||||||||| || ||||| ||||| || || || |||||| | || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 179862 TGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCC 179921 || || | ||||| ||| ||||| || ||||| || |||||||| | || ||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 179922 AGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 || || || ||||| |||| ||||| || Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 269 bits (298), Expect = 3e-67 Identities = 367/507 (72%), Gaps = 4/507 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | |||||||| ||||||||||||||| | ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| ||||||||||| ||||| ||||||||| || || ||||||||||| || | || Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | | || ||| | |||||||| || || |||| ||||||| | || | Sbjct 86 TGT-TTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 178036 TCTCTGGTACTTTTAACTACATGCTTG 178062 ||||||||||||| |||| ||| ||| Sbjct 27 TCTCTGGTACTTTCAACTTTATGATTG 1 Score = 122 bits (134), Expect = 1e-22 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| || |||||||| || | || Sbjct 8099 TGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 8158 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 8159 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 8218 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 179127 |||| |||||||| | || ||||||||| | |||||| ||| |||||| || ||||| Sbjct 8219 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCA 8277 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 179183 || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 8278 GTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGA 8333 >seq213450 Length=3525 Score = 158 bits (174), Expect = 1e-33 Identities = 206/285 (72%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 177999 GGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 178058 |||||||| || || |||| ||||||| | || |||||||||||||| |||| ||| Sbjct 3247 GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 3306 Query 178059 CTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT 178118 ||||||| || |||| ||||| ||| ||||||| | || |||||| | ||||| ||| Sbjct 3307 ATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAGCT 3366 Query 178119 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTC 178178 || ||||||| || || || ||| ||||||||||| ||| | | | | | Sbjct 3367 GGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATG--------GTTCCATGGTAGTTT 3418 Query 178179 G-TCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGA 178237 | || | || || || |||| ||| ||| || | |||||||| || || ||||| || Sbjct 3419 GATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGA 3478 Query 178238 AGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTT 178282 ||| || ||||| || || || || |||||||| || || || || Sbjct 3479 AGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATT 3523 >seq155648 Length=2022 Score = 152 bits (168), Expect = 6e-32 Identities = 218/307 (71%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 179336 CTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTT 179395 ||||||| ||||| | || ||| ||||| || || || |||| || ||||| ||| Sbjct 2021 CTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGTT 1962 Query 179396 GGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAG 179455 ||||||||||||| ||||| || || |||| || ||||| | |||||||| |||| Sbjct 1961 GGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAAG 1902 Query 179456 GTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTG 179515 | || || || ||||| | ||||| ||||| |||||||||||||| || | | || | Sbjct 1901 GATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCG 1842 Query 179516 GTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAG 179575 |||||| | ||||||||||||| ||| ||||| || || | | ||| || || | Sbjct 1841 CGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGTG 1782 Query 179576 AACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGG 179635 | ||||| || || || || || | || |||| || || || ||||| |||| Sbjct 1781 ATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGG 1722 Query 179636 TTACAGC 179642 | || || Sbjct 1721 TCACTGC 1715 >seq159272 Length=944 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 179353 TTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCG 179412 || ||| |||||| || || ||||||||||| ||||| |||||||| |||| | Sbjct 285 TTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTGGTTGGTTCATTGCATCTAGT 226 Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 ||||| | || ||||| ||| ||||| | |||||||| ||||| || || || |||||| Sbjct 225 TTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACA 166 Query 179473 CTCAACCCCTTTCACATGATGGGAGTTG 179500 | ||||| ||||| ||||||||| ||| Sbjct 165 TTGAACCCATTTCATATGATGGGATTTG 138 >seq36335 Length=20465 Score = 109 bits (120), Expect = 7e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 177990 TATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 178049 || ||| | |||||||| || || |||| ||||| | | || ||||| |||||||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 178050 AACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTC 178109 |||| ||| |||||||||| ||||| ||||| ||||||||||| || ||||||||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 178110 GGTGT 178114 ||||| Sbjct 3401 GGTGT 3397 >seq352821 Length=202 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 179744 CTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGA 179803 |||||||| | |||| | ||||| || | ||||| ||||| ||||| || || | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 179804 TCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATG 179863 || | ||||| ||||||||||| || || || ||||| || || || |||||| | || | Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 179864 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAG 179923 | || | ||||| ||| ||||| || ||||| || |||||||| | || ||||| | Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 179924 AAGAAGT 179930 | || || Sbjct 196 AGGAGGT 202 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 178214 TGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTT 178273 ||||||||| || || ||||| |||||||| |||||||| || || || ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 178274 CGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCT 178333 || | || |||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 178334 CGCAGC 178339 || || Sbjct 1077 GGCTGC 1082 >seq79754 Length=5746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || || |||||||||||||| || ||||| Sbjct 4820 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTT 4879 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 | ||| | ||| |||||| ||||||| || ||||||| ||| ||||| | |||| Sbjct 4880 GATGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGTACTCGTCACT 4939 Query 179728 GGTCTTTGGGTCTCTTCTATTG 179749 ||| | ||| | | |||||| Sbjct 4940 GGTTTATGGATGAGTGCTATTG 4961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591900233127200