Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9086 141 7e-28 seq40195 123 2e-22 seq1746187 116 3e-20 seq2155 107 1e-17 seq763614 93.3 3e-13 seq1750881 89.7 4e-12 seq754402 86.0 5e-11 seq39955 86.0 5e-11 >seq9086 Length=3140 Score = 141 bits (156), Expect = 7e-28 Identities = 532/824 (65%), Gaps = 18/824 (2%) Strand=Plus/Minus Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||| | ||| |||||||| || | ||||||||||||||| |||||||||| || | Sbjct 2730 GGTCATGACACCTCCAGCTGTCTCCAGACCAAGAGAAAGAGGTGTGACATCAAGCAGCAG 2671 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCAC 281780 | | || | || |||| | ||| ||||| | || || || | ||||||| Sbjct 2670 CAGGTCCTGGACCTTCTCATTGCCCTCTCCACTCAAGA-TGGCAGCCTGGACTGCAGCAC 2612 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 |||| |||||||| ||||| || || | | | || | || |||||||| || | Sbjct 2611 CATAGGCAACAGCCTCATCCGGGTTGATGTTCTTGCACAGCTCCTTGCCATTGAAGAAGT 2552 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| || || ||| | || || | | || || ||||| | |||| |||| Sbjct 2551 CCTGAAGCAGCTGCTGCACCCTTGGGATCCTGGTGGAGCCACCAACAAGGACAACATCAT 2492 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCA 281959 | || ||| | || |||| || | |||| | || ||||| || || | | Sbjct 2491 GGACA-GTGCTCTTGTCCATCTTAGCATCCCTCAGGCACTTCTCAACAGGCTCCATGCAC 2433 Query 281960 GCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 || || | || || ||| || ||||| | || | || | |||| | Sbjct 2432 TTCCTGAAGAGATCCATGTTCAAC--TCCTCGAACCTGGCACGGGTGATAGTGGTGTAGA 2375 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | ||||| || || ||| || |||| ||||| || || || | | ||| || || | Sbjct 2374 AGTCAATGCCCTCATACAGCGAGTCAATCTCAATGGTGGTCTGCGCAGTAGAGGAGAGGG 2315 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATT 282135 | || || || ||||| |||||||| || || || | ||| | | | ||| | | Sbjct 2314 TCCTCTTCGCCCGCTCACAAGCTGTCCTCAGCCTACGGAGGGCCCTGG--GGTTGCCACT 2257 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 | ||| | || | || |||||||| |||| ||| | | || | | || || Sbjct 2256 GATATCCTTCTTGTTCTTCCTCTTGAATTCTTGGACAAAGTGGTTGACCATCCTGTTGTC 2197 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 || || ||||| || | | ||| | || | || | | |||| || | || || Sbjct 2196 GAAGTCCTCACCACCAAGGTGAGTGTCACCCGCAGTGGACTTGACTTCAAAGATACCCTC 2137 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 ||||| | | || | ||||||| ||| ||||| || | ||||| || || ||||| Sbjct 2136 TTCAATGGTGAGTAGGGAAACATCAAAGGTGCCACCTCCGAGGTCAAAGATGAGAACATT 2077 Query 282316 CATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | || | ||| || || ||||| ||||| |||| ||||||||||||||| Sbjct 2076 CTTCTCACCAACACTGGTGGCCTTCTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGG 2017 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| || || | || |||||| || || ||||| ||| ||||| || ||||| || Sbjct 2016 CTCATTGATGATACGCATAACATTTAGGCCTGCAATCACTCCAGCATCCTTGGTGGCCTG 1957 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || ||||| ||||||| ||| |||| Sbjct 1956 CCTCTGAGAGTCATTGAAGTAGGCAGGGACAGTAACAACAGCAT 1913 >seq40195 Length=9226 Score = 123 bits (136), Expect = 2e-22 Identities = 532/826 (64%), Gaps = 24/826 (3%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | |||||||||||||||||||||||| | ||| | Sbjct 5113 GTCATCACACCCCCGGCTGTCTCCAGACCAAGAGAAAGAGGAGTGACATCCAATAGCAGC 5054 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | || ||||| | || || || | |||||||| Sbjct 5053 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGTACGGCAGCACC 4995 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 ||| |||||||| ||||||||||| | | || || || | || || ||||| || Sbjct 4994 ATAGGCAACAGCCTCATCAGGATTGATGCTCTTGCAC--AGCTCCTTGCCGTTGAAGAAG 4937 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||||| || || || ||||| | || || || ||||| | |||| ||| Sbjct 4936 TCCTGGAGAAGCTGCTGCACTTTGGGAATCCTAGTAGAACCACCAACAAGGACAACATCA 4877 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 4876 TGCACA-GTGCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCCACAGGCTCCATACA 4818 Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 || |||| || || || || || || | || | || | ||| | || Sbjct 4817 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTGGCCCGGGTGATGGTGG-AGTA 4761 Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 || ||||| || || |||| ||| |||| ||||| || || || | | || || || Sbjct 4760 GAAGTCAATGCCCTCAAACAGAGAGTCAATCTCAATTGTGGTCTGCGCGGTGGAGGAGAG 4701 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--A 282133 | | || || | ||||| | |||||| || || || | ||| ||| | ||| | Sbjct 4700 GGTTCTCTTTGCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTTG--GGTTGCCA 4643 Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 282193 | | || | || | || |||||||| || | || | | || | | || Sbjct 4642 CTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGGACGAAGTGGTTGACCATCCTGTTG 4583 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 || || || ||||| || | | ||| | || | || ||| | || | || | || Sbjct 4582 TCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTGACCTCAAAGATACCC 4523 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| | | ||| | |||||| ||| ||||| || | ||||| || || ||| Sbjct 4522 TCCTCAATGGTGAGAAGTGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACA 4463 Query 282314 TTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 ||| | || | ||| || || ||||||||||| |||| |||||||| ||| Sbjct 4462 TTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTT 4403 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || ||||| || || | | ||||| | |||||||| || ||||| || || || Sbjct 4402 GGCTCATTGATGATACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCC 4343 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || ||||| || ||||||||||| || || | ||| |||| Sbjct 4342 TGCCTCTGCGAATCATTGAAATATGCAGGGACTGTGACAACAGCAT 4297 >seq1746187 Length=8464 Score = 116 bits (128), Expect = 3e-20 Identities = 222/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | ||| || ||||| || || || || Sbjct 2651 TTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAAAGTCCTCCCCACCA 2710 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | ||| | || | || || | || | |||| || || |||| | | ||| Sbjct 2711 AGATGAGTGTCACCAGCTGTGGCCTTCACCTCAAAAATACCCTCCTCAATGGTAAGGAGA 2770 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TG 282330 | |||||| || |||||||| | ||||| ||||| |||||| | || | | || Sbjct 2771 GAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCTTCTCGCCGACACTG 2830 Query 282331 GT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 || | || ||||||||||| |||| ||||| || ||||| ||||| || || | | Sbjct 2831 GTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCGGTTGGCTCATTGATGATACGC 2890 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||||||||||||||| || ||||| || || || || || || ||||| || Sbjct 2891 ATCACATTAAGACCAGCAATAACACCAGCATCCTTGGTTGCCTGCCTCTGGGAATCATTG 2950 Query 282446 AAATATGCAGGAACAGTAATAACGGC 282471 || || ||||| || || | |||||| Sbjct 2951 AAGTAAGCAGGCACGGTGACAACGGC 2976 >seq2155 Length=11791 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | |||||||||||||| || ||||| ||||| |||| ||| | || |||||| Sbjct 5077 CCATATGACAAAGCAGCAGCAGTGGGCTCATTGATAATCCTCATAACCTCCAGTCCAGCA 5136 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || || || ||||| || || || || | ||| | ||| || ||||| || || |||||| Sbjct 5137 ATCCTACCAGCATCCTTGGTAGCCTGGCGTTGAGCATCATTGAAATAAGCTGGGACAGTA 5196 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 ||||| || | | ||| || |||| ||||| ||| |||| ||||| ||| Sbjct 5197 ATAACAGCCTTAGAGACTGTCTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTTA 5253 >seq763614 Length=10155 Score = 93.3 bits (102), Expect = 3e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| || || ||||||| ||||| | || | || |||| |||| || | Sbjct 8569 ACATCAAAAGTACCGCCACCCAAGTCAAACACTAGAA---TCGTTTCGTTGTTTT---TC 8622 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| | Sbjct 8623 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 8682 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || ||||| || || ||| ||| || || || || || || || Sbjct 8683 AGTCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGCGAGTCATTGAAGTACGCT 8742 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 |||||||||| || || | ||| Sbjct 8743 GGAACAGTAACCACCGCTTTTGT 8765 >seq1750881 Length=2368 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||||||||||||||||||||| || || || |||| ||| |||||||| | || || Sbjct 532 AGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCAATACGGCCAGC 591 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| || ||||| || || || | ||| || || || || ||||||||||| || || Sbjct 592 ATCCTTGGTGGCCTGCCTCTGAGCATCATTGAAGTAAGCTGGAACAGTAATGACAGC 648 >seq754402 Length=7781 Score = 86.0 bits (94), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 ||||| ||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 4482 AAGAGAGACATCGAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAAC 4423 Query 282328 T-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| || || ||||||||||| |||| |||||||| ||||| || || || || Sbjct 4422 ACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTTGGCTCGTTGATGAT 4363 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||||| | |||||||| || ||||| || || || || || || || || Sbjct 4362 ACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCCTGCCTCTGCGAGTC 4303 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || |||||||| ||||| | ||| |||| Sbjct 4302 ATTGAAGTATGCAGGTACAGTGACAACAGCAT 4271 >seq39955 Length=16318 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| || ||||||||||||||||||||||| || ||||| |||||||| ||| | || | Sbjct 2454 TGAAAGCAAAAGAAGGTCGTATTAGAGGAAACTTAATGGGGAAGCGTGTTGATTTCTCAG 2513 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATT 432374 | ||||| || || || | ||||| |||||| Sbjct 2514 CTCGTACTGTCATCACACCAGATCCGAATATT 2545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3651353662642920