Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq39955 84.2 5e-11 >seq39955 Length=16318 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 304929 GAATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAAC-GCATT 304987 ||| ||| ||||| |||| | ||||| || ||| | ||| || | ||| | | | Sbjct 2397 GAAATATCCAGGCCACTCAGCGTTCTGGAAGGCCTATTAAGTCAAT-ATGCAGCAGGCTG 2455 Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 |||| ||||| ||||||||| |||| || ||||||| || ||||||||||| || Sbjct 2456 AAAGCAAAAGAAGGTCGTATTAGAGGAAACTTAATGGGGAAGCGTGTTGATTTCTCAGCT 2515 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA- 305106 | | ||| |||||||| ||| | | |||| || || |||| || || || || || Sbjct 2516 CGTACTGTCATCACACCAGATCCGAATATTAACATTGATCAATTGGGGGTGCC-ATGGAG 2574 Query 305107 AATTGCTTTAAAACTAACATTTCCAGA 305133 |||||||| || || |||| ||||| Sbjct 2575 TATTGCTTTGAATCTGACATACCCAGA 2601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159161834561620