Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq759537 89.7 3e-13 seq765366 87.8 1e-12 seq1743593 86.0 4e-12 seq6362 86.0 4e-12 seq77180 84.2 1e-11 >seq759537 Length=12225 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||||| ||| ||| || || || |||||||| | ||| ||||| |||| || Sbjct 2646 CACCAGGTGTAGGGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTGCGGCCGTCCTC 2705 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 2706 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTT 2765 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| || | ||| ||| | ||||||| || ||||| || | ||||| || | Sbjct 2766 GATCTTCGCCTTGA-CATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCT 2824 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 2825 TGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2855 >seq765366 Length=14197 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || || ||| ||| || || ||||||||||||| Sbjct 545 ACCACCACGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 604 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || || ||||| ||||| |||||||| || | || Sbjct 605 CAGGGTGCGCCCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCCGGGGG 664 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| | | |||| ||| | |||||| || |||| Sbjct 665 GATGCCCTCCTTGTCCTGGATCTTC-GCCTTGACATTGTCAATCGTGTCGGAAGACTCCA 723 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || || |||||||||||| Sbjct 724 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 773 >seq1743593 Length=9171 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || ||||||||||| | || ||||| | || || Sbjct 1333 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTGCGACCATCCTC 1392 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| ||||| | |||||| || | || | || || ||||| Sbjct 1393 AAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1452 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| || | ||| | |||||| |||||||| || | ||||| || | Sbjct 1453 GATCTTCGCCTTC-ACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCT 1511 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || |||||||||||||| Sbjct 1512 TGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1542 >seq6362 Length=4956 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 2969 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTC 3028 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 3029 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 3088 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | ||| ||| | |||||| || ||||| |||| |||||| || | Sbjct 3089 GATCTTGGCCTTGA-CATTGTCGATGGTGTCCGACGACTCCACCTCAAGCGTGATGGTCT 3147 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 3148 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3178 >seq77180 Length=12269 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || ||||| |||| |||| || || ||||| || Sbjct 7121 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 7062 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || |||| | || || ||||| || || |||| | | Sbjct 7061 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 7003 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| || ||||| |||| ||||||||| || || || | ||| || | Sbjct 7002 TGTCGATCGTGTCCGACGACTCCACCTCAAGCGTGATCGTCTTCCCCGTCAGCGTCTTCA 6943 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 6942 CGAAGATCTGCAT 6930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321419264006400