Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq57095 226 8e-55 seq213450 179 1e-40 seq788035 111 5e-20 seq856698 100 8e-17 seq156267 80.6 8e-11 >seq57095 Length=8353 Score = 226 bits (250), Expect = 8e-55 Identities = 351/494 (71%), Gaps = 8/494 (2%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| || | || |||||||| | || ||||| || ||||||| Sbjct 499 AACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 440 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 439 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 381 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 380 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 321 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || || | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 320 CTCTGGTGCTATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 263 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 262 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 203 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 202 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 143 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 142 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 84 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | ||||| ||||||| || ||||| || |||| ||||||||| || ||||| Sbjct 83 TTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTC 24 Query 19987 GGGTACGTTCAACT 20000 ||||| ||||||| Sbjct 23 TGGTACTTTCAACT 10 >seq213450 Length=3525 Score = 179 bits (198), Expect = 1e-40 Identities = 232/314 (74%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 19920 CTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTG 19978 |||| || ||||| | | || || ||||||| || | ||| || |||| ||||||||| Sbjct 3221 CTGCTGT-TTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTA 3279 Query 19979 GGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATG 20038 || ||||| ||||| ||||||| ||| | ||||| || | || || ||||| | ||| Sbjct 3280 GGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATG 3339 Query 20039 CACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATG 20098 || | || |||||| | ||||| ||||||||||||| || || ||||||| ||| ||| Sbjct 3340 CATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATG 3399 Query 20099 CACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAG-- 20155 || ||||| | || || | ||| | | || ||||||||| | ||| || | Sbjct 3400 CATGGTTC-CATGGTA-------GTTTGATCAGGGAAACTACTGAAAATGAA--TCCGCT 3449 Query 20156 AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGT 20215 || | |||||||| ||||| ||||| |||||||| ||||| || || || ||||||||| Sbjct 3450 AATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGT 3509 Query 20216 TACTTTGGACGTTT 20229 || ||||| || || Sbjct 3510 TATTTTGGCCGATT 3523 >seq788035 Length=1366 Score = 111 bits (122), Expect = 5e-20 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20161 TGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTT 20220 ||||||||| ||||| ||||| ||||| || |||||||| || || ||| ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 20221 TGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCT 20280 ||| | || ||||||||||| ||| ||| ||||| |||||| ||||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 20281 TGCTGC 20286 ||||| Sbjct 1077 GGCTGC 1082 >seq856698 Length=257 Score = 100 bits (110), Expect = 8e-17 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 20348 AACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGG 20407 || |||||||| || ||||| || | | || | | ||||| || ||| |||||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 20408 GCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCAT 20467 ||||| || |||| |||||||| || || | || || ||||||||||| |||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 20468 AACTTCCCACTTGAC 20482 |||||||| || ||| Sbjct 123 AACTTCCCTCTAGAC 137 >seq156267 Length=5709 Score = 80.6 bits (88), Expect = 8e-11 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 20039 CACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATG 20098 || || ||||||||| | ||||| |||||||||||||| || || ||||||||||| ||| Sbjct 5391 CATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATG 5332 Query 20099 CACGGTTCGCTTGTTA 20114 || ||||| |||| || Sbjct 5331 CATGGTTC-CTTGGTA 5317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145615029960360