Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq57095 192 2e-44 seq788035 111 5e-20 seq856698 107 6e-19 >seq57095 Length=8353 Score = 192 bits (212), Expect = 2e-44 Identities = 341/493 (69%), Gaps = 6/493 (1%) Strand=Plus/Minus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| || | || |||||||| | || ||||| || ||||||| Sbjct 499 AACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 440 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 439 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 381 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| | | || ||||||||||| || || Sbjct 380 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 321 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || || | | || | | || || |||||| | ||||| |||||||||||| Sbjct 320 CTCTGGTGCTATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 263 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 262 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 203 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 202 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 143 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| ||| Sbjct 142 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 83 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | | ||||| | |||||||| ||| || | |||||||| || || || Sbjct 82 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCT 23 Query 29116 GGCACCTTCAACT 29128 || || ||||||| Sbjct 22 GGTACTTTCAACT 10 >seq788035 Length=1366 Score = 111 bits (122), Expect = 5e-20 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 29289 TGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTT 29348 ||||||||| ||||| ||||| ||||| ||||||||||| || || ||| | ||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 29349 TGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCT 29408 ||| | || ||||||||||||||| ||| || || |||||| ||||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 29409 TGCTGC 29414 ||||| Sbjct 1077 GGCTGC 1082 >seq856698 Length=257 Score = 107 bits (118), Expect = 6e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29476 AACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGG 29535 || ||||| || || ||||| || | | || | | ||||| || |||||||||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 29536 GCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCAT 29595 |||||| | |||| || |||||||| || | |||||||||||||| ||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 29596 AACTTCCCACTTGA 29609 |||||||| || || Sbjct 123 AACTTCCCTCTAGA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143498541533320