Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq57095 268 3e-67 seq213450 185 2e-42 seq856698 111 4e-20 seq788035 100 8e-17 seq36335 91.5 4e-14 seq837997 89.7 1e-13 seq1813671 82.4 2e-11 >seq57095 Length=8353 Score = 268 bits (296), Expect = 3e-67 Identities = 365/502 (73%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || || |||||||| ||||| ||||| || ||||||| | Sbjct 498 ACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 439 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| |||||||| ||||| ||||| || Sbjct 438 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 381 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||||| || || Sbjct 380 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 321 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || || | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 320 CTCTGGTGCTATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 263 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 262 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 203 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 202 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 143 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||||||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 142 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 83 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | | || || |||||||||| |||| || | ||||||||| || || | Sbjct 82 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCT 23 Query 19207 GGTACGTTCAACTACATGCTTG 19228 ||||| ||||||| ||| ||| Sbjct 22 GGTACTTTCAACTTTATGATTG 1 >seq213450 Length=3525 Score = 185 bits (204), Expect = 2e-42 Identities = 227/308 (74%), Gaps = 9/308 (3%) Strand=Plus/Plus Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 |||| || ||| | | || || |||||||||| |||| || | ||||||||| | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | || |||||| ||||||| ||| ||||||| ||| | || || |||||| | |||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 | | || |||||| | ||||| |||||||| |||| ||| || ||||| | ||| |||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAAC 19377 | ||||| | || || | ||| | | |||||||||||| | | ||| || Sbjct 3401 ATGGTTC-CATGGTA-------GTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAAT 3452 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | || ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct 3453 GAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTAT 3512 Query 19438 TTTGGTCG 19445 ||||| || Sbjct 3513 TTTGGCCG 3520 >seq856698 Length=257 Score = 111 bits (122), Expect = 4e-20 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 ||||| || || || ||||| || | |||| | | ||||| || ||| |||||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 ||||| || |||| ||||||||||| || | || |||||||| |||||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 19687 AACTTCCCACTTGATTTGGCT 19707 |||||||| || || || ||| Sbjct 123 AACTTCCCTCTAGACTTAGCT 143 >seq788035 Length=1366 Score = 100 bits (110), Expect = 8e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 ||| ||||| ||||| ||||| ||||| |||||||||||||| |||||| |||| ||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| | | || ||||| || || || ||||| |||||| |||| ||||| || Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 19500 GGCTGCTT 19507 |||||||| Sbjct 1077 GGCTGCTT 1084 >seq36335 Length=20465 Score = 91.5 bits (100), Expect = 4e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 19163 TTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACA 19222 |||||||||| |||| || | ||||| ||| || || ||||| ||||||| | Sbjct 3514 TTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTA 3455 Query 19223 TGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGT 19280 || ||||||||||||| || || |||||||| ||||| || ||||||||| | ||||| Sbjct 3454 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGT 3397 >seq837997 Length=1373 Score = 89.7 bits (98), Expect = 1e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 19351 GAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT 19410 |||||||||||| | | ||| || | || ||||| ||||| ||||| ||||||||| Sbjct 14 GAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 73 Query 19411 TATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 ||||| ||||| ||||||||||| |||||||| Sbjct 74 TATAATATTGTGGCTGCTCATGGTTATTTTGG 105 >seq1813671 Length=280 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||| ||||| || ||| ||||| |||| | || || || ||||||||||||||| ||| Sbjct 55 TTATATGGGTCGTGAGCGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGT 114 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTC 19149 ||| || ||||||| |||||| || || |||| || ||| Sbjct 115 TGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTC 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138100869864360