Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq45179 428 5e-115 seq57095 269 3e-67 seq155648 181 1e-40 seq213450 156 5e-33 seq856698 116 4e-21 seq36335 109 6e-19 seq352821 107 2e-18 seq159272 104 3e-17 seq788035 95.1 1e-14 seq79754 89.7 6e-13 seq759025 86.0 7e-12 >seq45179 Length=9647 Score = 428 bits (474), Expect = 5e-115 Identities = 544/746 (73%), Gaps = 2/746 (0%) Strand=Plus/Minus Query 161961 CAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTC 162020 ||| | || || || |||| |||||| || ||||| || || || || ||||| || ||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 162021 ATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCG 162080 ||| | || || |||||||| || || | || | || || || ||||| || | Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCA 9509 Query 162081 TTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCC 162140 ||||||||||| |||||||||||||| || |||||||| || ||| |||| || || Sbjct 9508 TTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCT 9449 Query 162141 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTT 162200 ||||||| || || ||| ||||| || ||||| || ||| ||||| | | |||||| Sbjct 9448 GGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCT-TTTCTT 9390 Query 162201 C-AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 162259 | ||||||| ||||| ||||| ||||||| || ||||||||||||||||| || || | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 162260 AGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGA 162319 ||| | || || |||| |||||||| |||| || || ||||| || ||| ||||| Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 162320 TGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTC 162379 || || ||||| ||||| || ||| | | || || | ||||| |||||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 162380 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCG 162439 ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || || || Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 162440 GTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGG 162499 ||| | ||||| || ||| | ||||| || || | ||| |||||| ||||||| Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 162500 CATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGC 162559 | | |||| | ||||| ||| | ||||| || || || || ||||| ||| | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 162560 AGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACT 162619 ||| ||||||||||| ||||| || |||||||| || || ||||| | || || || | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 162620 ACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGT 162679 ||||| ||| | ||| || || || || ||||| || |||| ||||| || || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 162680 TCTTCCTAGAGGCAACGCCCTTTAAT 162705 ||| || | || ||||| ||||||| Sbjct 8909 TCTACCACGTGGAAACGCTCTTTAAT 8884 >seq57095 Length=8353 Score = 269 bits (298), Expect = 3e-67 Identities = 365/506 (72%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | ||| | ||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 | |||||| | | || | | |||||||| ||||||||||||||| | ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | | ||||||||||| ||||| ||| |||||||| ||||| || || || || |||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||| ||| | | || ||| | |||||||| || || |||| ||||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 160439 CTCTGGTACTTTTAACTACATGCTTG 160464 |||||||||||| |||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 Score = 113 bits (124), Expect = 5e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 161759 || |||||| | | |||| |||||||||||||| || |||||||| || | || || Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 161760 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGG 161819 || ||||||| | ||| | || |||||| |||| || |||||||| | ||| ||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 161820 TATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT-ACAGCGTCAGT 161878 ||||||||||| | || ||||||||| | || ||| || |||||| || || |||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279 Query 161879 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 161938 | || || || | | | | || ||| | | || || ||||| || || || || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 161939 AGGGGATTT 161947 ||| ||||| Sbjct 8340 AGGAGATTT 8348 >seq155648 Length=2022 Score = 181 bits (200), Expect = 1e-40 Identities = 227/309 (73%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 162084 TCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGT 162143 |||||||| |||||| ||||||| ||| |||||||| || ||| ||| || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 162144 TGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC-A 162202 ||||| || || ||| ||||| |||||| | || || ||||| | | ||||||| | Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCT-TTTCTTCCA 1904 Query 162203 AGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 162262 |||||| ||||| ||||| ||||||| || ||||||||||||||||| || || |||| Sbjct 1903 AGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGG 1844 Query 162263 TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGG 162322 | | || | || |||||||| |||| || || ||||| || ||| ||||| || Sbjct 1843 CGCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGG 1784 Query 162323 AGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTAT 162382 || ||||| ||||| || ||| | | || || | ||||| |||||||| || Sbjct 1783 TGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAAT 1724 Query 162383 GGTCACTGC 162391 ||||||||| Sbjct 1723 GGTCACTGC 1715 >seq213450 Length=3525 Score = 156 bits (172), Expect = 5e-33 Identities = 220/310 (71%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 ||||||| ||| | | || || | |||||||| || || |||| ||||||| | | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494 | |||||||||||||| |||| ||| ||||||| || |||| ||||| ||| |||||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 160554 ||| || |||||| | || || ||||| ||||||| || || | ||| |||||||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 160555 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 160614 | || | || || ||| | ||||| ||||||| || || || Sbjct 3401 ATGGTTCCATGGTAGTTTGATCA-------GGGAAACTACTGAAAATGAATCCGCTAATG 3453 Query 160615 ACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACT 160674 | ||||| || || ||||||||||||||||| || || || || || || |||||||| | Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513 Query 160675 TCGGTCGTTT 160684 | || || || Sbjct 3514 TTGGCCGATT 3523 >seq856698 Length=257 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 160803 AACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGG 160862 || |||||||| |||||||| || | | ||| |||||||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 160863 GCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 160922 || || | | || |||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 160923 AACTTCCCACTCGACCTCGCTGCTGCTGA 160951 |||||||| || ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq36335 Length=20465 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 160392 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 160451 || ||| | |||||||| || || |||| ||||| | | || ||||| |||||||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 160452 AACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTC 160511 |||| ||| |||||||||| ||||| ||||| |||||||||||||| ||||||||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 160512 GGCGT 160516 || || Sbjct 3401 GGTGT 3397 >seq352821 Length=202 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 162493 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 162552 |||||||| | |||| | ||||| ||| | ||||| || || || || ||||| | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 162553 TCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATG 162612 || | ||||| ||||||||||| |||||||| |||||||| || || ||||| | || | Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 162613 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAG 162672 | || | ||||| ||| | ||| || || || || ||||| || |||| ||||| | Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 162673 AAGAAGT 162679 | || || Sbjct 196 AGGAGGT 202 >seq159272 Length=944 Score = 104 bits (114), Expect = 3e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 162082 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCA 162141 ||||||| || |||| | |||||| || |||||||| |||||| | || || || Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 162142 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC 162201 ||||||| | || | ||||| | ||||| || ||| ||||| | | ||||||| Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCT-TTTCTTC 187 Query 162202 -AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 162260 ||||||| ||||| ||||| ||||||| || |||||||||||| ||| | | || || Sbjct 186 CAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTA 127 Query 162261 GGTG 162264 |||| Sbjct 126 GGTG 123 >seq788035 Length=1366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| || || |||||||||||||| || || ||||| || || || ||||||| | Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || | || |||||||||||||| || |||||||| ||||| | ||||||||| || Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077 Query 160737 GCAGC 160741 || || Sbjct 1078 GCTGC 1082 >seq79754 Length=5746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 162330 GCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACT 162389 ||||| ||||| || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 162390 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 162449 || ||||| || ||||| || ||||| | | |||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 162450 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 162486 || || ||| | ||||| | || | ||| |||||| Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq759025 Length=5890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 160760 CTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAA 160819 ||||||||||||| | ||| |||| || ||||| |||||||| || |||||||| ||||| Sbjct 4928 CTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 4987 Query 160820 CCAGTCCATCCTCGATGGTCAAGGTCG 160846 ||| || | | ||| |||||||||| Sbjct 4988 CCAATCTGTAGTTGATAGTCAAGGTCG 5014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546786334204000