Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= NC_026924.1
Length=174885
Score E
Sequences producing significant alignments: (Bits) Value
seq45179 428 5e-115
seq57095 269 3e-67
seq155648 181 1e-40
seq213450 156 5e-33
seq856698 116 4e-21
seq36335 109 6e-19
seq352821 107 2e-18
seq159272 104 3e-17
seq788035 95.1 1e-14
seq79754 89.7 6e-13
seq759025 86.0 7e-12
>seq45179
Length=9647
Score = 428 bits (474), Expect = 5e-115
Identities = 544/746 (73%), Gaps = 2/746 (0%)
Strand=Plus/Minus
Query 161961 CAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTC 162020
||| | || || || |||| |||||| || ||||| || || || || ||||| || |||
Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569
Query 162021 ATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCG 162080
||| | || || |||||||| || || | || | || || || ||||| || |
Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCA 9509
Query 162081 TTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCC 162140
||||||||||| |||||||||||||| || |||||||| || ||| |||| || ||
Sbjct 9508 TTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCT 9449
Query 162141 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTT 162200
||||||| || || ||| ||||| || ||||| || ||| ||||| | | ||||||
Sbjct 9448 GGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCT-TTTCTT 9390
Query 162201 C-AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 162259
| ||||||| ||||| ||||| ||||||| || ||||||||||||||||| || || |
Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330
Query 162260 AGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGA 162319
||| | || || |||| |||||||| |||| || || ||||| || ||| |||||
Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270
Query 162320 TGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTC 162379
|| || ||||| ||||| || ||| | | || || | ||||| ||||||||
Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210
Query 162380 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCG 162439
||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || || ||
Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150
Query 162440 GTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGG 162499
||| | ||||| || ||| | ||||| || || | ||| |||||| |||||||
Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090
Query 162500 CATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGC 162559
| | |||| | ||||| ||| | ||||| || || || || ||||| ||| | ||
Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030
Query 162560 AGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACT 162619
||| ||||||||||| ||||| || |||||||| || || ||||| | || || || |
Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970
Query 162620 ACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGT 162679
||||| ||| | ||| || || || || ||||| || |||| ||||| || || ||
Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910
Query 162680 TCTTCCTAGAGGCAACGCCCTTTAAT 162705
||| || | || ||||| |||||||
Sbjct 8909 TCTACCACGTGGAAACGCTCTTTAAT 8884
>seq57095
Length=8353
Score = 269 bits (298), Expect = 3e-67
Identities = 365/506 (72%), Gaps = 2/506 (0%)
Strand=Plus/Minus
Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019
|||||| | ||| ||||| || | || || || || |||| |||||||| || ||
Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446
Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078
||||| || || | ||| | ||||| ||||| || || |||||||| ||||||| ||
Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387
Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138
|| || || || || || || ||||| || || ||||||| | | ||||| |||||
Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327
Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198
|| ||||||||||| || |||| |||| || || || | ||||| || || ||
Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267
Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258
|||||||| ||||| ||||||||||| | || || |||||||||| | || | ||
Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207
Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318
| |||||| | | || | | |||||||| ||||||||||||||| | |||
Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147
Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378
| | ||||||||||| ||||| ||| |||||||| ||||| || || || || ||||
Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87
Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438
||| ||| | | || ||| | |||||||| || || |||| ||||||| | || ||
Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27
Query 160439 CTCTGGTACTTTTAACTACATGCTTG 160464
|||||||||||| |||| ||| |||
Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1
Score = 113 bits (124), Expect = 5e-20
Identities = 176/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 161759
|| |||||| | | |||| |||||||||||||| || |||||||| || | || ||
Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160
Query 161760 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGG 161819
|| ||||||| | ||| | || |||||| |||| || |||||||| | ||| |||
Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220
Query 161820 TATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT-ACAGCGTCAGT 161878
||||||||||| | || ||||||||| | || ||| || |||||| || || ||||
Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279
Query 161879 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 161938
| || || || | | | | || ||| | | || || ||||| || || || ||
Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339
Query 161939 AGGGGATTT 161947
||| |||||
Sbjct 8340 AGGAGATTT 8348
>seq155648
Length=2022
Score = 181 bits (200), Expect = 1e-40
Identities = 227/309 (73%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 162084 TCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGT 162143
|||||||| |||||| ||||||| ||| |||||||| || ||| ||| || || ||
Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963
Query 162144 TGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC-A 162202
||||| || || ||| ||||| |||||| | || || ||||| | | ||||||| |
Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCT-TTTCTTCCA 1904
Query 162203 AGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 162262
|||||| ||||| ||||| ||||||| || ||||||||||||||||| || || ||||
Sbjct 1903 AGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGG 1844
Query 162263 TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGG 162322
| | || | || |||||||| |||| || || ||||| || ||| ||||| ||
Sbjct 1843 CGCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGG 1784
Query 162323 AGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTAT 162382
|| ||||| ||||| || ||| | | || || | ||||| |||||||| ||
Sbjct 1783 TGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAAT 1724
Query 162383 GGTCACTGC 162391
|||||||||
Sbjct 1723 GGTCACTGC 1715
>seq213450
Length=3525
Score = 156 bits (172), Expect = 5e-33
Identities = 220/310 (71%), Gaps = 7/310 (2%)
Strand=Plus/Plus
Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434
||||||| ||| | | || || | |||||||| || || |||| ||||||| | |
Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280
Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494
| |||||||||||||| |||| ||| ||||||| || |||| ||||| ||| ||||||
Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340
Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 160554
||| || |||||| | || || ||||| ||||||| || || | ||| ||||||||
Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400
Query 160555 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 160614
| || | || || ||| | ||||| ||||||| || || ||
Sbjct 3401 ATGGTTCCATGGTAGTTTGATCA-------GGGAAACTACTGAAAATGAATCCGCTAATG 3453
Query 160615 ACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACT 160674
| ||||| || || ||||||||||||||||| || || || || || || |||||||| |
Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513
Query 160675 TCGGTCGTTT 160684
| || || ||
Sbjct 3514 TTGGCCGATT 3523
>seq856698
Length=257
Score = 116 bits (128), Expect = 4e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 160803 AACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGG 160862
|| |||||||| |||||||| || | | ||| |||||||||| || | || || |||
Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62
Query 160863 GCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 160922
|| || | | || |||||| |||||||||||||| |||||||| ||||| || |||
Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122
Query 160923 AACTTCCCACTCGACCTCGCTGCTGCTGA 160951
|||||||| || ||| | ||||||| |||
Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151
>seq36335
Length=20465
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 160392 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 160451
|| ||| | |||||||| || || |||| ||||| | | || ||||| ||||||||
Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462
Query 160452 AACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTC 160511
|||| ||| |||||||||| ||||| ||||| |||||||||||||| ||||||||| |
Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402
Query 160512 GGCGT 160516
|| ||
Sbjct 3401 GGTGT 3397
>seq352821
Length=202
Score = 107 bits (118), Expect = 2e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 162493 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 162552
|||||||| | |||| | ||||| ||| | ||||| || || || || ||||| |
Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75
Query 162553 TCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATG 162612
|| | ||||| ||||||||||| |||||||| |||||||| || || ||||| | || |
Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135
Query 162613 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAG 162672
| || | ||||| ||| | ||| || || || || ||||| || |||| ||||| |
Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195
Query 162673 AAGAAGT 162679
| || ||
Sbjct 196 AGGAGGT 202
>seq159272
Length=944
Score = 104 bits (114), Expect = 3e-17
Identities = 135/184 (73%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 162082 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCA 162141
||||||| || |||| | |||||| || |||||||| |||||| | || || ||
Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246
Query 162142 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC 162201
||||||| | || | ||||| | ||||| || ||| ||||| | | |||||||
Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCT-TTTCTTC 187
Query 162202 -AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 162260
||||||| ||||| ||||| ||||||| || |||||||||||| ||| | | || ||
Sbjct 186 CAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTA 127
Query 162261 GGTG 162264
||||
Sbjct 126 GGTG 123
>seq788035
Length=1366
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676
||||| || || |||||||||||||| || || ||||| || || || ||||||| |
Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017
Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736
|| | || |||||||||||||| || |||||||| ||||| | ||||||||| ||
Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077
Query 160737 GCAGC 160741
|| ||
Sbjct 1078 GCTGC 1082
>seq79754
Length=5746
Score = 89.7 bits (98), Expect = 6e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 162330 GCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACT 162389
||||| ||||| || ||| | | || || | ||||| |||||||| |||||||||
Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852
Query 162390 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 162449
|| ||||| || ||||| || ||||| | | |||| ||||| || || | ||| | |||
Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912
Query 162450 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 162486
|| || ||| | ||||| | || | ||| ||||||
Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949
>seq759025
Length=5890
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 160760 CTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAA 160819
||||||||||||| | ||| |||| || ||||| |||||||| || |||||||| |||||
Sbjct 4928 CTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 4987
Query 160820 CCAGTCCATCCTCGATGGTCAAGGTCG 160846
||| || | | ||| ||||||||||
Sbjct 4988 CCAATCTGTAGTTGATAGTCAAGGTCG 5014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546786334204000
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