Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq45179 394 1e-104 seq57095 257 2e-63 seq213450 168 8e-37 seq352821 104 3e-17 seq36335 104 3e-17 seq155648 100 3e-16 seq79754 95.1 1e-14 seq788035 93.3 5e-14 seq156267 86.0 8e-12 >seq45179 Length=9647 Score = 394 bits (436), Expect = 1e-104 Identities = 539/750 (72%), Gaps = 2/750 (0%) Strand=Plus/Minus Query 182625 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 182684 || ||||| ||| | || || || |||| ||| || ||||||||||| || || || || Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 182685 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCTTACAA 182743 || ||||||||| | | ||||||||||||||||| ||| || | | | ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTG-TTCAATTGCGGCCTTATAA 9519 Query 182744 TGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTT 182803 ||| || | || |||||||| |||||||| || || ||| ||||| || ||||| | Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 182804 GGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCT 182863 ||| || || |||||| || |||||| ||||| || || ||||| || | ||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 182864 GTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGC 182923 | ||| | || || || || || ||||| | ||||| || ||||||||||||||||| Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 182924 TGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTT 182983 || || | || | || ||||| | ||||| ||||| | || ||||| || || | Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 182984 GTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGA 183043 | ||| || || || ||||| || || || || | | ||||| | || || Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 183044 GACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAG 183103 || ||||| ||||| || || || || |||||||| |||||||| || ||||| ||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 183104 CAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTC 183163 |||||| |||||||| || ||||||||| | ||||| || |||| ||| | ||| | Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 183164 TTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGA 183223 | ||||||| | |||| | ||||| || | ||||| ||||| ||||| || || Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 183224 GATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAA 183283 || | ||||| ||||||||||| || ||||| |||||||| || || || ||| | || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 183284 TGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCC 183343 || || | ||||| ||| ||||| || ||||| || |||||||| | || ||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 183344 TGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||| || |||||||| | || ||||| || Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 257 bits (284), Expect = 2e-63 Identities = 362/506 (72%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | |||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | ||||||||||| ||||| ||||||||| || ||||| || ||||| || |||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 ||| ||| | | || ||| | |||||||| || ||||| | ||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 181460 CTCTGGTACATTCAACTACATGCTTG 181485 ||||||||| ||||||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 >seq213450 Length=3525 Score = 168 bits (186), Expect = 8e-37 Identities = 224/310 (72%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 181396 CTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTG 181455 ||||||| ||| | | || || | |||||||| || ||||| | ||||| | | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 181456 GCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGC 181515 | ||||||||||| ||||||| ||| |||| || || ||||||||||||| | |||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 181516 ATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGC 181575 ||| || |||||||| ||||| || |||||||| | ||||| || |||| ||| |||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 181576 ACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACT 181635 | ||||| |||| | || | || | || || ||||||| ||| || || Sbjct 3401 ATGGTTCCATGGT---AGTTTGA----TCAGGGAAACTACTGAAAATGAATCCGCTAATG 3453 Query 181636 ATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACT 181695 | |||||||| || || ||||| |||||||| || || || || || || || ||||| | Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513 Query 181696 TTGGTCGCTT 181705 |||| || || Sbjct 3514 TTGGCCGATT 3523 >seq352821 Length=202 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 183166 CTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGA 183225 ||||||| | |||| | ||||| || | ||||| ||||| ||||| || || | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 183226 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATG 183285 | | ||||| ||||||||||| || || || |||||||| || || || ||| | || | Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 183286 AAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTG 183345 | || | ||||| ||| ||||| || ||||| || |||||||| | || ||||||| Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 183346 AAGAAGT 183352 | || || Sbjct 196 AGGAGGT 202 >seq36335 Length=20465 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 181413 TATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTC 181472 || ||| | |||||||| || ||||| | |||| | || ||||| ||||| ||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 181473 AACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTG 181532 |||| ||| |||| ||||| |||||||||||||| || |||||||| ||||||||||| Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 181533 GGTGT 181537 ||||| Sbjct 3401 GGTGT 3397 >seq155648 Length=2022 Score = 100 bits (110), Expect = 3e-16 Identities = 207/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 182757 TCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCT 182816 |||||||| |||||| | || || || ||||| || ||||| ||| || || | Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 182817 TGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAG 182876 ||||| || |||||| ||||| || || |||| || | ||| | | ||| | || Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 182877 GGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGT 182936 || || || || ||||| | ||||| || ||||||||||||||||| || || | || Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 182937 GGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGA 182996 | | |||| | ||||| ||||| | || ||||| || || | | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 182997 GAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATG 183056 || ||||| || || || || | | ||||| | || || || ||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 183057 GTTACAGC 183064 || || || Sbjct 1722 GTCACTGC 1715 >seq79754 Length=5746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| | || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 4820 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTT 4879 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 | ||||| ||| |||||| ||||||| || ||||||||| | ||||| | |||| Sbjct 4880 GATGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGTACTCGTCACT 4939 Query 183150 GGTCTTTGGGTCTCTTCTATTG 183171 ||| | ||| | | |||||| Sbjct 4940 GGTTTATGGATGAGTGCTATTG 4961 >seq788035 Length=1366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 181637 TGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTT 181696 ||||||||| || || ||||| ||||| || || ||||| || || || | ||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 181697 TGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 181756 ||| | || ||||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 181757 CGCAGC 181762 || || Sbjct 1077 GGCTGC 1082 >seq156267 Length=5709 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 181515 CATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATG 181574 ||||| ||||||||||| ||||| || |||||||| || ||||| || |||||||| ||| Sbjct 5391 CATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATG 5332 Query 181575 CACGGTTCTTTGGTTACATC 181594 || ||||| ||||| || || Sbjct 5331 CATGGTTCCTTGGTAACCTC 5312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600647188297600