Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq45179 372 4e-98 seq57095 282 6e-71 seq213450 136 6e-27 seq155648 123 4e-23 seq352821 114 2e-20 seq856698 107 3e-18 seq788035 93.3 6e-14 seq159272 91.5 2e-13 seq761979 89.7 7e-13 >seq45179 Length=9647 Score = 372 bits (412), Expect = 4e-98 Identities = 527/738 (71%), Gaps = 2/738 (0%) Strand=Plus/Minus Query 176124 CAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTC 176183 ||| | || || || ||| | ||||| ||||||||||| || || || || || || ||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 176184 ATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCA 176243 ||| | || || |||||||| || | || | || || || || || || || Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCA 9509 Query 176244 TTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCT 176303 ||| |||||| || ||||| ||||| ||| || ||| | || ||||| || |||||| Sbjct 9508 TTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCT 9449 Query 176304 TCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTT 176363 ||||||||||| || ||||| || ||||| || ||| ||||| | | |||||| Sbjct 9448 GGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCT-TTTCTT 9390 Query 176364 C-AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 176422 | | || || || || ||||| ||||||| || ||||||||||||||||| || || | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 176423 AGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGA 176482 ||| | || || |||| || || ||||| | || || ||||| || |||| ||| || Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 176483 TGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTC 176542 || || || |||||| ||| || | | || || | ||||| || ||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 176543 GATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCG 176602 ||||| ||||| |||||||| ||||| |||||||| || ||||| ||| ||||| || Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 176603 TTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGG 176662 |||| | || ||||||||| | ||||| || |||| ||| | ||| | |||||| Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 176663 CATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGC 176722 | | |||| | ||||| || | ||||| ||||| ||||| ||| || || | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 176723 AGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACT 176782 ||| ||||||||||| ||||| ||||||||||| || || || ||| | ||||| || | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 176783 AAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGT 176842 | || ||||||||| || |||||| || ||||| || ||||||| || || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 176843 TCTACCTAGAGGTAACGC 176860 |||||| | || ||||| Sbjct 8909 TCTACCACGTGGAAACGC 8892 >seq57095 Length=8353 Score = 282 bits (312), Expect = 6e-71 Identities = 346/470 (74%), Gaps = 2/470 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||||||||||| |||| |||||||||||| | ||||| ||||| || || |||||||| Sbjct 478 AATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 419 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||| ||| | | ||| || ||||| || || || || || ||||| Sbjct 418 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 360 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 || || ||||||| | | ||||||||||| || ||||||||||| || |||||| Sbjct 359 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTAC 300 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || ||||| | ||||| |||||||| |||||||| || | | || || || Sbjct 299 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 240 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| | ||| |||| | |||||| | ||||| | Sbjct 239 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 180 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 179 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 120 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||| ||| | || || ||| | | || ||| | ||||| Sbjct 119 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 60 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACT 174963 ||| || || || | ||||| || || |||||||| || ||||||| Sbjct 59 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACT 10 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||| | |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 8091 TGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCT 8150 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 8151 ATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGT 8210 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | || ||||||| | || ||| ||| || | || Sbjct 8211 AACTTCTTGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAAC 8270 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || || ||||| || | | | || ||| | | ||||| ||||| || Sbjct 8271 CGCAGCAGTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCC 8330 Query 176093 TGAATCTCAGGGCGACTT 176110 ||| | || || || || Sbjct 8331 AGAAGCACAAGGAGATTT 8348 >seq213450 Length=3525 Score = 136 bits (150), Expect = 6e-27 Identities = 201/284 (71%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 174909 GGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATG 174968 |||||||| || || || | ||||| || || |||||||| || ||||||| ||| Sbjct 3247 GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 3306 Query 174969 TTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCA 175028 | || || || |||| || |||||||| ||||| | || |||||||| || || || Sbjct 3307 ATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAGCT 3366 Query 175029 GGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTT 175088 ||||| |||| ||||| | ||| || ||||||||||| | || || | | Sbjct 3367 GGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTC-CATGGTAGTT------TG 3419 Query 175089 GTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAA 175148 || | || || ||||||| ||| || || | |||||||| || || ||||| ||| Sbjct 3420 ATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 3479 Query 175149 GAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTT 175192 ||||| ||||| || ||||| || ||||| || || || || || Sbjct 3480 GAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATT 3523 >seq155648 Length=2022 Score = 123 bits (136), Expect = 4e-23 Identities = 213/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 176249 TGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTG 176308 |||||| || ||| | ||||| || || ||| | || |||| || |||||| || Sbjct 2020 TGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGTTG 1961 Query 176309 GTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC-AGG 176367 ||||||||| || ||||| |||||| | || || ||||| | | ||||||| | | Sbjct 1960 GTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCT-TTTCTTCCAAG 1902 Query 176368 GTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTG 176427 | || || || ||||| ||||||| || ||||||||||||||||| || || |||| | Sbjct 1901 GATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCG 1842 Query 176428 GAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAG 176487 | || | || || || ||||| | || || ||||| || |||| ||| || || | Sbjct 1841 CGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGTG 1782 Query 176488 AACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGG 176547 | || |||||| ||| || | | || || | ||||| || ||||| |||| Sbjct 1781 ATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGG 1722 Query 176548 TTACTGC 176554 | ||||| Sbjct 1721 TCACTGC 1715 >seq352821 Length=202 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 176657 TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT 176716 ||||||| | |||| | ||||| || | ||||| ||||| ||||| ||| || || Sbjct 17 TATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAAT 76 Query 176717 TAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGA 176776 | ||||| ||||||||||| ||||||||||||||||| || || || ||| | ||||| Sbjct 77 CCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACGA 136 Query 176777 AGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGA 176836 || | | || ||||||||| || |||||| || ||||| || ||||||| || Sbjct 137 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 196 Query 176837 AGAAGT 176842 || || Sbjct 197 GGAGGT 202 >seq856698 Length=257 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 175311 AATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGG 175370 ||||||||||| |||||||| ||||| | || | |||||| | || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 175371 GCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACAC 175430 || ||| | | ||| | ||| ||||| ||||||||||||||||| | ||||| ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 175431 AACTTCCCACTAGATTTGGCAGCAGCTGA 175459 |||||||| ||||| || || || | ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq788035 Length=1366 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 175124 TGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTT 175183 ||||||||| || || ||||| ||||| || |||||||| ||||| || |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 175184 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTT 175243 || | || ||||||||||| ||| || |||||||| || || | ||||||||||| Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 175244 AGCCGC 175249 || || Sbjct 1077 GGCTGC 1082 >seq159272 Length=944 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 176265 TTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCC 176324 ||||| ||| || ||| | |||||||| || |||||| |||||| |||| | Sbjct 285 TTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTGGTTGGTTCATTGCATCTAGT 226 Query 176325 TTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGAC 176383 ||||| | ||||| || ||| ||||| | | ||||||| | || || || || ||||| Sbjct 225 TTTGGCATAGCAGCGATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGAC 167 Query 176384 ACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTG 176427 | ||||||| || |||||||||||| ||| | | || |||||| Sbjct 166 ATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTAGGTG 123 >seq761979 Length=10221 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 174636 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACAC 174695 |||| |||||| || ||||||||||| || |||||| ||| | | ||| | ||| Sbjct 436 TATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCAC 377 Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTC 174755 || |||||||| || ||| || | | || || ||| | ||||| |||||||||| Sbjct 376 TTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 317 Query 174756 CAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAA 174815 | ||| || | || |||||| | ||||| | |||||||| |||||| |||| Sbjct 316 GAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAA 257 Query 174816 CTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATA 174859 || || ||| | |||||| ||||| || ||| ||||| Sbjct 256 CTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713338117709600