Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq45179 407 2e-108 seq57095 269 3e-67 seq213450 156 5e-33 seq155648 145 9e-30 seq36335 102 1e-16 seq352821 100 3e-16 seq79754 95.1 1e-14 seq156267 86.0 7e-12 seq788035 84.2 3e-11 >seq45179 Length=9647 Score = 407 bits (450), Expect = 2e-108 Identities = 540/747 (72%), Gaps = 2/747 (0%) Strand=Plus/Minus Query 179487 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 179546 || ||||| ||| | || || || |||| ||| || ||||||||||| || || || || Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 179547 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAA 179605 || ||||||||| | | ||||||||||||||||| ||| | | | | ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGG-CCTTATAA 9519 Query 179606 TGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTT 179665 ||| || | || |||||||| |||||||| || || ||| ||||| || ||||| | Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 179666 GGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTT 179725 ||| || || |||||| || |||||| ||||| || || ||||| || | ||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 179726 GCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGC 179785 || ||| | || || || || || |||||| | ||||| || ||||||||||||||||| Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 179786 TGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATT 179845 || || |||| | || ||||| | ||||| ||||||| || ||||| || || | Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 179846 GTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGA 179905 | ||| || || || ||||||||||| || ||| | | || || | ||||| Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 179906 GACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTC 179965 |||||||| ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 179966 TAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATC 180025 || || || ||| | ||||| || ||| | ||||| || || | ||| |||||| Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 180026 CTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGA 180085 |||||||| | |||| | ||||| ||| | ||||| || || || || ||||| Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 180086 GATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAA 180145 ||| | ||||| |||||||| || |||||||| ||||||||||| || |||||| | || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 180146 TGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCC 180205 || || | ||||| ||| ||||| | ||||| || ||||| | ||||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 180206 AGAAGAAGTTCTGCCAAGAGGTAATGC 180232 || || ||||| ||| | || || || Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGC 8892 >seq57095 Length=8353 Score = 269 bits (298), Expect = 3e-67 Identities = 365/506 (72%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | ||||||||||| ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || | || ||| | |||||||| |||||||| | ||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 178328 CTCTGGTACATTCAACTACATGCTTG 178353 ||||||||| ||||||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 >seq213450 Length=3525 Score = 156 bits (172), Expect = 5e-33 Identities = 220/308 (71%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 178266 GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGC 178325 || || ||| || | || || | |||||||| |||||||| | ||||| | || Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| ||| |||| || || |||| |||||||| | ||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 | || |||||||| ||||| || |||||||||| ||||| || |||| ||| ||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 178446 GGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTAT 178505 ||||| |||| | || | | | ||||| ||||||| ||||| || | Sbjct 3403 GGTTCCATGGT---AGTTTGA----TCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565 ||||| || || || ||||| |||||||| || || || || || || ||||| || || Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 178566 GGTCGTTT 178573 || || || Sbjct 3516 GGCCGATT 3523 >seq155648 Length=2022 Score = 145 bits (160), Expect = 9e-30 Identities = 217/308 (70%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 179619 TCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCT 179678 |||||||| |||||| | || || || ||||| || ||||| ||| || || | Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 179679 TGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAG 179738 ||||| || |||||| ||||| || || |||| || | ||| | || ||| | || Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 179739 GGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGA 179798 || || || || |||||| | ||||| || ||||||||||||||||| || || |||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 179799 GGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGA 179858 | | |||| | ||||| ||||||| || ||||| || || | | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 179859 GAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATG 179918 || ||||||||||| || ||| | | || || | ||||| |||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 179919 GTCACTGC 179926 |||||||| Sbjct 1722 GTCACTGC 1715 >seq36335 Length=20465 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 178272 TTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCT 178331 ||| || | || ||| | |||||||| |||||||| | |||| | || ||||| Sbjct 3530 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCC 3471 Query 178332 GGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTC 178391 ||||| ||||||| ||| |||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 3470 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3411 Query 178392 CACATGTTGGGTGT 178405 |||||||| ||||| Sbjct 3410 CACATGTTAGGTGT 3397 >seq352821 Length=202 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 180028 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGA 180087 |||||||| | |||| | ||||| ||| | ||||| || || || || ||||| | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 180088 TCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATG 180147 || | ||||| |||||||| || ||||| || ||||||||||| || |||||| | || | Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 180148 AAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 | || | ||||| ||| ||||| | ||||| || ||||| Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 178 >seq79754 Length=5746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 179865 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 179924 ||||||||||| || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 179925 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 179984 || ||||| || ||||| || ||||| | | |||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 179985 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 180021 || || ||| | ||||| | || | ||| |||||| Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq156267 Length=5709 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 178383 CACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATG 178442 || || ||||||||||| ||||| || ||||||||||| ||||| || |||||||| ||| Sbjct 5391 CATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATG 5332 Query 178443 CACGGTTCTTTGGTTACATC 178462 || ||||| ||||| || || Sbjct 5331 CATGGTTCCTTGGTAACCTC 5312 >seq788035 Length=1366 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 178505 TGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTT 178564 |||||| || || || ||||| ||||| || || ||||| || || || |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 178565 CGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 178624 || | || ||||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 178625 CGCAGC 178630 || || Sbjct 1077 GGCTGC 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592234850289600