Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq45179 414 1e-110 seq57095 251 8e-62 seq155648 178 1e-39 seq213450 165 9e-36 seq856698 116 4e-21 seq36335 109 6e-19 seq788035 102 9e-17 seq159272 93.3 5e-14 seq79754 89.7 6e-13 seq352821 87.8 2e-12 seq34999 86.0 7e-12 >seq45179 Length=9647 Score = 414 bits (458), Expect = 1e-110 Identities = 541/746 (73%), Gaps = 2/746 (0%) Strand=Plus/Minus Query 160172 CAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTC 160231 ||| | || || || |||| |||||| || ||||| || || || || ||||| || ||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 160232 ATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGC 160290 ||| | || || |||||||| || || ||| || | | || ||||| ||||| || | Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTC 9510 Query 160291 GTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTC 160350 ||||||||||| |||||||| ||||| |||||||| || || ||| |||| || || Sbjct 9509 ATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATC 9450 Query 160351 CAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCT 160410 ||||||| || || ||| ||||| || ||||| || ||| ||||| | | ||| | Sbjct 9449 TGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTT 9390 Query 160411 TCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 160470 ||||||||||| || |||||| | ||||| || ||||||||||||||||| || || | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 160471 AGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGA 160530 ||| | || ||||| | || || ||||| | || ||||| ||||| || | ||| || Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 160531 TGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTC 160590 || || ||||||||||| || ||| | | || || | ||||| |||||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 160591 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCG 160650 ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || || || Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 160651 GTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGG 160710 ||| | ||||| || ||| | ||||| || || | ||| | |||| |||||| Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 160711 CATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGC 160770 | | |||| | ||||| || | ||||| || || || || || || || | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 160771 AGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACT 160830 ||| |||||||| ||||||||||| ||||||||||| || || || | || || || | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 160831 ACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGT 160890 ||||| ||| | ||| || || || || ||||| || |||| ||||| || || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 160891 TCTTCCTAGAGGCAACGCCCTTTAAT 160916 ||| || | || ||||| ||||||| Sbjct 8909 TCTACCACGTGGAAACGCTCTTTAAT 8884 >seq57095 Length=8353 Score = 251 bits (278), Expect = 8e-62 Identities = 361/506 (71%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | |||||||| ||||| ||||||||| | ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | ||||||||||| ||||| ||| |||||||| || || || || || || |||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | | || ||| | |||||||| || || |||| ||||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 158858 CTCTGGTACTTTTAACTACATGCTTG 158883 |||||||||||| |||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 Score = 118 bits (130), Expect = 1e-21 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || |||||| | | |||| |||||||||||||| || |||||||| || | || || Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 159971 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGG 160030 || ||||||| | ||| | || |||||| |||| || |||||||| | ||| ||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 160031 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT-ACAGCGTCAGT 160089 |||||||||||| | || ||||||||| | || ||| || |||||| || || |||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279 Query 160090 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 160149 | || || || | | | | || ||| | | || || ||||| || || || || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 160150 AGGGGATTT 160158 ||| ||||| Sbjct 8340 AGGAGATTT 8348 >seq155648 Length=2022 Score = 178 bits (196), Expect = 1e-39 Identities = 224/308 (73%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 160295 TCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGT 160354 |||||||| |||||| | ||||| ||||||||| || || ||| ||| || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 160355 TGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAA 160414 ||||| || || ||| ||||| |||||| | || || ||||| | | ||| | ||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 160415 GGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGA 160474 |||||||| || |||||| | ||||| || ||||||||||||||||| || || |||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 160475 GGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGA 160534 | | |||| | || || ||||| | || ||||| ||||| || | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 160535 GAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATG 160594 || ||||||||||| || ||| | | || || | ||||| |||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 160595 GTCACTGC 160602 |||||||| Sbjct 1722 GTCACTGC 1715 >seq213450 Length=3525 Score = 165 bits (182), Expect = 9e-36 Identities = 222/310 (72%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 158794 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158853 ||||||| ||| | | || || | |||||||| || || |||| ||||||| | | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 158854 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158913 | |||||||||||||| |||| ||| ||||||| || |||| ||||||||| |||||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 158914 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158973 | | || || ||| | ||||| ||||| ||||||| || || || ||| |||||||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 158974 ATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 159033 |||| | || || ||| | ||||| ||||||| || || || Sbjct 3401 ATGGTTCCATGGTAGTTTGATCA-------GGGAAACTACTGAAAATGAATCCGCTAATG 3453 Query 159034 ATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACT 159093 | |||||||| || || ||||| ||||| || |||||||| || || || |||||||| | Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513 Query 159094 TCGGTCGTTT 159103 | || || || Sbjct 3514 TTGGCCGATT 3523 >seq856698 Length=257 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 159222 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 159281 || |||||||| |||||||| || | ||||| |||| ||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 159282 GCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 159341 || ||| | | |||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 159342 AACTTCCCACTCGACCTTGCTGCTGCTGA 159370 |||||||| || ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq36335 Length=20465 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 158811 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 158870 || ||| | |||||||| || || |||| ||||| | | || ||||| |||||||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 158871 AACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTC 158930 |||| ||| |||||||||| ||||| ||||||||||||||||| || ||||| ||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 158931 GGTGT 158935 ||||| Sbjct 3401 GGTGT 3397 >seq788035 Length=1366 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 159035 TGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTT 159094 ||||||||| || || ||||| |||||||| ||||| || || || || ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 159095 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 159154 || | || ||||||||||| ||| || |||||||| ||||| || ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 159155 TGCTGC 159160 ||||| Sbjct 1077 GGCTGC 1082 >seq159272 Length=944 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 160293 TCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCA 160352 ||||||| || |||| | ||||| |||||||| || |||||| | || || || Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 160353 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 160412 ||||||| | || | ||||| | ||||| || ||| ||||| | | ||| | | Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCC 186 Query 160413 AAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 160472 |||||||||| || ||||| | ||||| || |||||||||||| ||| | | || ||| Sbjct 185 AAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTAG 126 Query 160473 G 160473 | Sbjct 125 G 125 >seq79754 Length=5746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 160541 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 160600 ||||||||||| || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 160601 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160660 || ||||| || ||||| || ||||| | | |||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 160661 TTTTTCATGTTGTTTGT 160677 || || ||| | ||||| Sbjct 4913 TTCTTTATGCTATTTGT 4929 >seq352821 Length=202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 160705 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 160764 ||||||| | |||| | ||||| || | ||||| || || || || || || || Sbjct 17 TATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAAT 76 Query 160765 TAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGA 160824 | ||||| |||||||| |||||||| || ||||||||||| || || || | || || Sbjct 77 CCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACGA 136 Query 160825 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 160884 || | ||||| ||| | ||| || || || || ||||| || |||| ||||| || Sbjct 137 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 196 Query 160885 AGAAGT 160890 || || Sbjct 197 GGAGGT 202 >seq34999 Length=3418 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || |||||| | | |||| |||||||||||||| || |||||||| || | || || Sbjct 498 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 557 Query 159971 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTA-CTGGAACAACTTTCGCAACGAGCTG 160029 || ||||||| ||||| | || |||||| ||| |||| || | | ||| || Sbjct 558 CCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTATAGGGAAAAAAAATTGTAACTTCTTG 617 Query 160030 GTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT 160066 ||||||||||| | | || ||||||||| | || ||| Sbjct 618 GTATACCCATGAATTGGCAAGTTCCTATTTGGAAGGT 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539915736953600