Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq45179 452 5e-122 seq57095 284 1e-71 seq155648 163 3e-35 seq213450 152 6e-32 seq36335 113 5e-20 seq856698 107 2e-18 seq352821 107 2e-18 seq761979 104 3e-17 seq159272 100 3e-16 seq788035 96.9 4e-15 seq79754 95.1 1e-14 seq79039 84.2 3e-11 >seq45179 Length=9647 Score = 452 bits (500), Expect = 5e-122 Identities = 550/747 (74%), Gaps = 2/747 (0%) Strand=Plus/Minus Query 180285 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTA 180344 || ||||| ||| | || || || |||| ||| || ||||||||||| || || || ||| Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 180345 ATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAAT 180404 || || || ||| ||||||| |||||||| || || | || | || ||||| ||| Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAAT 9518 Query 180405 GCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTG 180464 || || ||||||||||||| || ||||| ||||| ||||| || || || |||||| Sbjct 9517 GCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTG 9458 Query 180465 GGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTA 180524 || || || ||||||||||||| || |||||| |||||||| || ||| ||||| | Sbjct 9457 GGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 9398 Query 180525 CTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGC 180583 || ||||||| | || || || || ||||| | ||||| || ||||||||||||||||| Sbjct 9397 CT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 180584 TGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACT 180643 || || |||| | || |||||| || || ||||| | ||| || || ||||| || Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 180644 GTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGA 180703 | ||| || || || ||||| ||||| || ||| | |||| |||| || || Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 180704 AACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTC 180763 |||||| || ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 180764 TAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATC 180823 || || || ||| | ||||| || ||| | ||||| || || | ||| |||||| Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 180824 CTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGA 180883 |||||||| | |||| | ||||| ||| | ||||| || || || || || || Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 180884 GATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAA 180943 ||| | ||||| ||||||||||| || ||||| ||||||||||| || || || || || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 180944 TGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCC 181003 || || | ||||| ||| ||||| || ||||| || || ||||| | || ||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 181004 TGAAGAAGTTCTACCAAGAGGTAACGC 181030 ||| || ||||||||| | || ||||| Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGC 8892 >seq57095 Length=8353 Score = 284 bits (314), Expect = 1e-71 Identities = 368/506 (73%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| ||| | |||||| | || | || ||||||||||| || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | || ||| | || || || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || |||||||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| ||||||||||||||| || ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| || ||||| ||||||||| || || || || || ||||| | ||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | | || ||| | |||||||| || ||||||| ||||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 179340 CTCTGGTACTTTTAACTACATGCTTG 179365 |||||||||||| |||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 >seq155648 Length=2022 Score = 163 bits (180), Expect = 3e-35 Identities = 223/309 (72%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 180417 TCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGT 180476 |||||||| || ||| | ||||| |||||| || || || |||| ||| || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 180477 TGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTC-A 180535 ||||||||||| || |||||| || ||| | || || ||||| | || ||||||| | Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCT-TTTCTTCCA 1904 Query 180536 GGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 180595 || || || || ||||| | ||||| || ||||||||||||||||| || || |||| Sbjct 1903 AGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGG 1844 Query 180596 TGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGG 180655 | | ||| || || || ||||| | ||| || || ||||| || | ||| || || Sbjct 1843 CGCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGG 1784 Query 180656 AGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTAT 180715 || ||||| ||||| || ||| | |||| |||| || |||||||| || || Sbjct 1783 TGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAAT 1724 Query 180716 GGTCACTGC 180724 ||||||||| Sbjct 1723 GGTCACTGC 1715 >seq213450 Length=3525 Score = 152 bits (168), Expect = 6e-32 Identities = 205/285 (72%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 179302 GGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 179361 |||||||| || ||||||| ||||||| | || |||||||||||||| |||| ||| Sbjct 3247 GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 3306 Query 179362 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 179421 ||||||| || |||| ||||||||| ||||||| | || || ||| | ||||| ||| Sbjct 3307 ATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAGCT 3366 Query 179422 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTT 179481 || ||||||| || || || ||| ||||||||| | ||| | | | | || Sbjct 3367 GGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA--------TGGTTCCATGGTAGTTT 3418 Query 179482 GTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGA 179540 | || | ||||| ||||| | || || || | ||||| || || || ||||| || Sbjct 3419 GATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGA 3478 Query 179541 AGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTT 179585 |||||| ||||| || || || || ||||| || || || || || Sbjct 3479 AGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATT 3523 >seq36335 Length=20465 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 179293 TATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 179352 || ||| | |||||||| || ||||||| ||||| | | || ||||| |||||||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 179353 AACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTC 179412 |||| ||| |||||||||| ||||| ||||||||||||||||| || ||||| ||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 179413 GGTGT 179417 ||||| Sbjct 3401 GGTGT 3397 >seq856698 Length=257 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 179704 AACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGG 179763 || |||||||| |||||||| || | |||| ||||||| || || |||| || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 179764 GCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 179823 || || | | |||||||| | ||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 179824 AACTTCCCACTCGACCTTGCTGCTGCTGA 179852 |||||||| || ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq352821 Length=202 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 180826 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGA 180885 |||||||| | |||| | ||||| ||| | ||||| || || || || || || | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 180886 TCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATG 180945 || | ||||| ||||||||||| || || || ||||||||||| || || || || || | Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 180946 AAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTG 181005 | || | ||||| ||| ||||| || ||||| || || ||||| | || ||||||| Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 181006 AAGAAGT 181012 | || || Sbjct 196 AGGAGGT 202 >seq761979 Length=10221 Score = 104 bits (114), Expect = 3e-17 Identities = 182/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 178988 ATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCT 179047 ||||||| | || | ||||| || || |||| | | |||| |||||| || |||| Sbjct 477 ATATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCT 418 Query 179048 CTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAG 179107 |||||||| || | || | ||| | | || | ||||| ||||| || || ||| Sbjct 417 CTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAG 358 Query 179108 CAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACT 179167 ||||| | ||||||||| | || || |||||||||| | || | | || |||| Sbjct 357 TTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACT 298 Query 179168 TCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTA 179227 || | | || | | |||||||| |||||| ||||||| || |||||| |||| Sbjct 297 TCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTA 238 Query 179228 TGCGTCCATGGATCTGTGTTGCATA 179252 ||| ||| || || ||||||||| Sbjct 237 TGCATCCTTGAATTGTTGTTGCATA 213 >seq159272 Length=944 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 180412 CATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGT 180471 || ||||||| || || | | ||||| ||||| || || |||||||| || || | Sbjct 308 CAATCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAAT 249 Query 180472 CCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTC 180531 | |||||||| |||| | |||||| ||||||| || ||| ||||| | || |||| Sbjct 248 CTGGTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCT-TTTC 190 Query 180532 TTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590 ||| | || || || || ||||| | ||||| || |||||||||||| ||| | | || Sbjct 189 TTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTA 130 Query 180591 CTAGGTG 180597 |||||| Sbjct 129 TTAGGTG 123 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 179517 TGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTT 179576 |||||| || || || ||||| ||||| || |||||||| || || || |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 179577 CGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCT 179636 || | || |||||||||||||| ||||||||||| || ||||| ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 179637 TGCTGC 179642 ||||| Sbjct 1077 GGCTGC 1082 >seq79754 Length=5746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 180663 GCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACT 180722 ||||| ||||| || ||| | |||| |||| || |||||||| || ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 180723 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 180782 || ||||| || ||||| || ||||| | | |||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 180783 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 180819 || || ||| | ||||| | || | ||| |||||| Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq79039 Length=6720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 180882 GAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTG 180941 || ||| | ||||| ||||||||||| || |||| ||||||| ||| || || | || Sbjct 4438 GAAATCTGTGCAGCGGAAGATCCTGAATTTAAGACTTTCTACATCAAAAATATTATTTTA 4379 Query 180942 AATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTC 181001 || || | | | ||| ||| ||||| || ||||| || || ||||| | || ||| Sbjct 4378 AACGAGGATATTCATGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTC 4319 Query 181002 CCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 ||||| || |||||| || | || ||||| Sbjct 4318 CCTGAGGAGGTTCTATCATGTGGAAACGC 4290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596456655609600