Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_027371.1 Length=29741 Score E Sequences producing significant alignments: (Bits) Value seq1742705 288 2e-73 >seq1742705 Length=226 Score = 288 bits (318), Expect = 2e-73 Identities = 195/226 (86%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 21181 TCACCCCAACACATCAATCTCGCGAGACACCCCGCCACCGGCACGAACACGCGCCAAAAT 21240 |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCACCCCATAATATTAATCTCGCGAGACACCCCGCCACCGGCACGAACACGCGCCAAAAT 60 Query 21241 ATCGTCCACCTGCCCAGACGTAAACCTTGCCCTACGCTCATCCGTCGGCCTCGCCACAGG 21300 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 61 ATCGTCCACCTGCCCAGACGTAAACCGGGCCCTACGCTCATCCGTAGGCCTCGCCACAGG 120 Query 21301 CTCCGGCTGCCCCTCACTATTAGCAGACCTGTAATGATCCAACACGTCNNNNNNNNNNNN 21360 |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 CTCCGGCTGCCCCTCACTATTAGCAGACCTGTAATGATCCAACATGTCCAGTACAGCCCA 180 Query 21361 NNNNNNNNNCTCAAACGGGCGCTGCCAACCATTGAGATGGGCCGCC 21406 |||||||||||||||||||||||| || ||||||||| Sbjct 181 CTCACACCACTCAAACGGGCGCTGCCAACCATTCAGGTGGGCCGCC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 92997123888120