Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4499 118 9e-22 seq763663 109 5e-19 seq752483 107 2e-18 seq269176 96.9 3e-15 seq774391 95.1 1e-14 seq750497 89.7 4e-13 seq8128 87.8 1e-12 seq41905 86.0 5e-12 seq6362 86.0 5e-12 seq1743593 84.2 2e-11 seq759537 84.2 2e-11 >seq4499 Length=5690 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | || | |||| || | || || || || || || ||||||||| Sbjct 643 GCCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 584 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| |||||||| ||||||||| | ||||| ||||| || |||||||| Sbjct 583 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 524 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| | || || || Sbjct 523 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 464 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 463 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 416 >seq763663 Length=3499 Score = 109 bits (120), Expect = 5e-19 Identities = 169/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 ||||| || || ||||| | || | |||| || | || || || || || || ||| Sbjct 2920 AATTACTGACCACCGCGGAGGCGGAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTG 2979 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 ||||| | | |||| |||| || ||||| || || ||| | || |||||||| || Sbjct 2980 TAGTCAGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGG 3039 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 |||||||| | ||||| || || ||||||| || | | | || | ||||||| | Sbjct 3040 TCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAG 3099 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||||| || ||||| |||| ||||| || || || ||||||||||| |||||| || Sbjct 3100 CTCTCAACCTCCAGAGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATACCT 3159 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | |||| |||| || ||||| || || Sbjct 3187 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCGTCCTCCAGCTGCTTTCCT 3246 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || ||||| || | ||||| || || ||||||| || Sbjct 3247 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3306 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| | ||||| || ||||| || | ||||| || || || Sbjct 3307 ACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTC 3366 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 3367 TTCACAAAGATCTGCATA 3384 >seq752483 Length=2742 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| ||||| || ||||||||||| || | || |||| ||| Sbjct 1420 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCAGCCAACGTACGACCGTCCTCG 1361 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | ||||| | ||| || || ||||| | |||||| ||||| | Sbjct 1360 AGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGG 1301 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | || | |||||| | ||||| ||||| ||||| | || Sbjct 1300 ATCTTGGCCTTCACATTATCAATAGTGTCAGAACTCTCAACCTCTAGGGTTATGGTCTTC 1241 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || |||||||| || ||||| Sbjct 1240 CCAGTGAGGGTCTTCACAAAAATCTGCAT 1212 >seq269176 Length=4233 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | ||| || || || || | ||||||||| Sbjct 1151 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGCACGTTGTAGTCGGC 1210 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||| |||| || ||||| || ||| || | ||||| ||||| || |||||||| Sbjct 1211 CAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGACGAAGATGAGCCGCTGCTGGTCCGGCGG 1270 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| || || || Sbjct 1271 GATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCAC 1330 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 1331 CTCCAGGGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1378 >seq774391 Length=5162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || || || || || Sbjct 5010 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGTTGCTTGCCA 4951 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| ||||| ||||||| ||| Sbjct 4950 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 4891 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| || ||||| Sbjct 4890 ACGTTGTCAATCGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 4831 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 4830 TTCACAAAGATCTGCAT 4814 >seq750497 Length=14261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || ||||| | || || ||||| || || Sbjct 11550 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGCCCATCCTCAAGCTGCTTGCCA 11609 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || |||||||| | ||||| || || ||||||| || Sbjct 11610 GCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 11669 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 11670 ACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 11729 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 11730 TTCACAAAGATCTGCAT 11746 >seq8128 Length=3827 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 |||| ||| | || || || || || |||||||| ||| || || | || | || || Sbjct 3272 ACCAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCGG-CAAGTGTCCGGCCATCCTC 3214 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || || || | ||||| ||||| || |||||||| | ||||| || || Sbjct 3213 GAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 3154 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||| | || ||||| || || || || | || Sbjct 3153 GATCTTTGCCTTGACATTGTCAATTGTGTCGGAGGACTCAACCTCAAGTGTGATGGTCTT 3094 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| ||||||||||| ||||| Sbjct 3093 CCCGGTCAGAGTCTTCACAAAGATCTGCAT 3064 >seq41905 Length=7320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || |||||||| || || Sbjct 3453 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 3512 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| || Sbjct 3513 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTG 3572 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 3573 ACATTGTCGATGGTGTCCGAGGACTCTACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 3632 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3633 TTCACAAAGATCTGCAT 3649 >seq6362 Length=4956 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | || |||| || ||||| || ||| Sbjct 2982 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCCAGCTGCTTGCCG 3041 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | ||||| || || ||||||| || Sbjct 3042 GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 3101 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | ||||||||||| || Sbjct 3102 ACATTGTCGATGGTGTCCGACGACTCCACCTCAAGCGTGATGGTCTTGCCCGTCAGGGTC 3161 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 3162 TTCACGAAGATCTGCAT 3178 >seq1743593 Length=9171 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || || || || || | ||||| | || || Sbjct 1562 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTGCGCCCATCCTCA 1621 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | ||||| |||||||| |||||||| | |||||| ||||| | Sbjct 1622 AGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGGTCCGGCGGGATACCCTCCTTATCCTGG 1681 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || || || || || || | ||| Sbjct 1682 ATCTTTGCCTTGACATTGTCAATTGTGTCAGAAGACTCGACCTCAAGTGTGATGGTCTTG 1741 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 1742 CCGGTGAGCGTCTTCACAAAGATCTGCAT 1770 >seq759537 Length=12225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| |||| || || || || ||||||||||| || | |||| |||| ||| Sbjct 2647 ACCAGGTGTAGGGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTGCGGCCGTCCTCG 2706 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || || ||||| || |||||||| | ||||| || || | Sbjct 2707 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTTG 2766 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | || || || || || || || | ||| Sbjct 2767 ATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTG 2826 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| ||||| ||||| Sbjct 2827 CCGGTGAGGGTCTTCACGAAGATCTGCAT 2855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415517006483040