Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq78186 86.0 2e-11 >seq78186 Length=6745 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| | ||||| || || ||||| || | || || ||| || Sbjct 731 GCTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 790 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || ||||||||||| | || ||||| || || |||| || || ||||| ||| Sbjct 791 TCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAAC 849 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| |||| |||||||||||||| || |||||| Sbjct 850 GAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1551330143776900