Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq38087 1413 0.0 >seq38087 Length=6230 Score = 1413 bits (1566), Expect = 0.0 Identities = 785/786 (99%), Gaps = 0/786 (0%) Strand=Plus/Plus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 570 Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 630 Query 22233 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 22292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 690 Query 22293 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 22352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 750 Query 22353 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 22412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 751 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 810 Query 22413 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 22472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 870 Query 22473 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 22532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 871 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 930 Query 22533 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCG 22592 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 931 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAACTCCGGATGAGCATTCATCAGGCG 990 Query 22593 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 22652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 1050 Query 22653 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 22712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 1110 Query 22713 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAt 22772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAT 1170 Query 22773 ttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCC 22832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 TTTTTTCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCC 1230 Query 22833 CGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTC 22892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 CGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTC 1290 Query 22893 TCATTT 22898 |||||| Sbjct 1291 TCATTT 1296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180461947405560