Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq78186 113 6e-20 seq779604 91.5 2e-13 seq1747981 87.8 2e-12 >seq78186 Length=6745 Score = 113 bits (124), Expect = 6e-20 Identities = 305/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | || ||| ||||| Sbjct 1178 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 1119 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || | ||||| | | || ||| |||| | | ||| || || Sbjct 1118 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCAT-GAGCAGGCG 1060 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | || |||| ||||||| | ||| || |||||| || | ||| || Sbjct 1059 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCGCA 1000 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| ||||| ||| |||| | |||| || || || ||||| ||||| || Sbjct 999 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCTCGAA 940 Query 122610 GATAGTTTCGGTAGTGGGTCTA--TTAC---GCA--AAGTCTT-GAAGAGCTCCACGGCA 122661 || ||| | | | || | || | ||| | ||| | || ||| || ||| Sbjct 939 GACG----CGGGACTCG-TCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCG 888 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| || ||||| || ||||| || || || || |||||| || || ||| Sbjct 887 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 828 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| ||||||||||| | ||| | || |||||||| || || ||||||||||| ||| Sbjct 827 ATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 768 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || || | | ||| ||||||||| Sbjct 767 TCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 732 >seq779604 Length=6485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 211/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| ||||| | || || || || || || |||||||| || | | Sbjct 3529 AAGCCGTCCATCTCCGTGAGCAGCTGGTTGATGGTCTGCTCCCTCTCATCGTTCCC---C 3585 Query 11600 ATACC---ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 ||| ||| |||| || ||| | || || || ||||||||||| |||||||| || Sbjct 3586 CCACCCATACCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATG 3645 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | || ||||| || | ||||| || ||||| || Sbjct 3646 CAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACGCCG 3705 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| || || | | || | ||| || ||| || || | || || Sbjct 3706 ACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCG 3765 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 |||| ||| ||||| || || ||||| || || || ||| || |||| ||| ||| Sbjct 3766 GCGACGGCACGGGCCAGCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCC 3825 Query 11837 CGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 3826 TTGGGGATCTTGGCCCC 3842 >seq1747981 Length=6417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/287 (67%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | || ||| | ||| || | | || ||||| ||| Sbjct 1630 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1571 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | || ||||| | ||||| ||||||||||| || | | ||||| | Sbjct 1570 ACAACAATGATACCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAACAGCTGATTCAGA 1511 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||| || | |||||| || || | |||| | || Sbjct 1510 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 1457 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 1456 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 1397 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| ||||||||||||||||||||||| Sbjct 1396 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613756675632000