Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq78186 163 3e-35 seq763138 109 7e-19 seq49623 93.3 5e-14 seq779604 91.5 2e-13 seq1747981 86.0 8e-12 >seq78186 Length=6745 Score = 163 bits (180), Expect = 3e-35 Identities = 317/455 (70%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 1178 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 1119 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || ||||| | | ||| | | ||| || || ||| | |||| || | Sbjct 1118 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGGC 1061 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| ||| ||| |||||| || | ||| | Sbjct 1060 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCGC 1001 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||||||||| ||| |||| || |||| |||||||| || ||| ||||| || Sbjct 1000 AGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCTCGA 941 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAA 130019 | | | ||| || |||| | | ||||| | ||| | || ||| || ||| | Sbjct 940 AGACGCGGGACTC-GT-CCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGA 887 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| ||||||||||| || || |||||| || || |||| Sbjct 886 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 827 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| ||||||||||| | |||||| || || || || ||||| ||||||||||| |||| Sbjct 826 TGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 767 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || ||||| || | || ||||| || ||| Sbjct 766 CGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 732 >seq763138 Length=14332 Score = 109 bits (120), Expect = 7e-19 Identities = 296/445 (67%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 13986 CCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGT 14044 ||| |||||||| | | || ||| || | | |||| |||||| |||||||| ||| Sbjct 4800 CCAGCTTCTTGT-TGGCGCTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGA 4742 Query 14045 AGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATA 14104 || ||||| | || || || ||||| || |||||||| || ||| |||| ||||| Sbjct 4741 AGCCCCACGGACACCTGCCGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCGTCGAGGATT 4682 Query 14105 TCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATC 14164 || |||||||| || ||||| || | || ||| | ||| ||||| |||||| Sbjct 4681 TCCGGCCGGTTCGTGGCGGCGATCACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATC 4622 Query 14165 TCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGC 14223 || || | || || || | || || || || || || || | | || | |||| Sbjct 4621 TCGGTGAGCAGCTGGTTCAGAGTCTGCTCACGCTCGTCGTTGCCCCCGCCGATG-CCCGT 4563 Query 14224 ACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC 14283 | ||| ||| ||||||||||| || || |||||||| || | || || || || Sbjct 4562 GCCGCGCTGCCGGCCGACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTC 4503 Query 14284 ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 14343 ||| | || | || ||||| | | || || || ||||| |||||||| | Sbjct 4502 CTTGGCCTTGTTGAACAGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGAT 4443 Query 14344 AAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGG 14402 || | | |||| || | || |||||| ||| | || |||||||| || || Sbjct 4442 GAACTCCGACCCGGA-CAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGG 4384 Query 14403 CGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || || |||||||||||||| || Sbjct 4383 CCAGCAGCGTCTTCCCCGTCCCCGG 4359 >seq49623 Length=10526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG 119474 |||||||| || || ||||||||||| || ||||||| || || | ||| | ||| Sbjct 3730 TGAGGCCTTGGGGTGCCAGCGTTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGG 3671 Query 119475 GACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 119534 ||||| | |||||| | | | | | ||||| ||| ||| || || | || Sbjct 3670 GACATGAGATGGTAGGTTCTGATGGCAGAGTCGATGTCATCCTTGTGTATCCCTACTGAA 3611 Query 119535 ACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAA 119594 |||| ||| ||||||| || || |||||| | | ||| | ||| || |||||||| Sbjct 3610 ACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTAA 3551 Query 119595 CTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCC 119640 | |||||| ||||||| ||||| ||| || |||| |||||| Sbjct 3550 GACCTCTCCAGAGTCTTGAAGCCAAAGTAGTCATAATCAAAGTCCC 3505 >seq779604 Length=6485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 277/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||| | || ||||| || | ||||| || || || || |||||| | ||| Sbjct 3427 ACGGTCACCTGCCGATCGAACCTCCCTGGCCGCAGAAGCGCCGAGTCAAGAACATCCGGC 3486 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 3487 CTGTTGGTCGCAGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 3544 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCAC 14225 | | || || |||||||| || || | ||||| ||| | | ||| ||| |||| Sbjct 3545 TGAGCAGCTGGTTGATGGTCTGCTCCCTCTCATCGTTCCC---CCCACCCATACCGGCAC 3601 Query 14226 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCAC 14285 || ||| | |||||||||||||| ||||||||||| ||||| || || || | Sbjct 3602 CACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCT 3661 Query 14286 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 14345 ||| || |||| || | ||| || || || || || || || | ||| || | Sbjct 3662 TGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACGCCGACGAAGAGCTCGACGA 3721 Query 14346 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | | |||| || || |||||| || | || || |||| ||| ||||| | Sbjct 3722 ACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCCA 3781 Query 14406 GGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCA 14464 | || |||||||| ||||| || || |||| | |||| | | | |||||| |||| Sbjct 3782 GCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCC 3840 Query 14465 CC 14466 || Sbjct 3841 CC 3842 >seq1747981 Length=6417 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/202 (70%), Gaps = 10/202 (5%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||||||||| || ||||| | || || || | |||||| ||| || Sbjct 1546 TCAAAACCATCCATCTCAGTCAACAGCTGATTCAGAGTCTGCTCCCTTTCATCGTTCCCA 1487 Query 14210 GGCATACC---ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 ||| ||| | | | |||| | || || || ||||||||||| | || || Sbjct 1486 ---CCACCGATACCTGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAACACT 1430 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGA 14324 || || || ||| || ||| |||| |||| ||| || || | |||||| | Sbjct 1429 ATGCAAGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCACGAACACGGGAGGCACCAA 1372 Query 14325 CACCCACAAACATCTCCACAAA 14346 |||| ||||||||||||||||| Sbjct 1371 CACCAACAAACATCTCCACAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604378013295200