Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq78186 141 1e-28 seq1747981 114 1e-20 seq779604 87.8 2e-12 >seq78186 Length=6745 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 732 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 791 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 792 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 851 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 852 GCTCATCTCCCGCGACGAGGGCCTGCAC 879 >seq1747981 Length=6417 Score = 114 bits (126), Expect = 1e-20 Identities = 204/291 (70%), Gaps = 20/291 (7%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1630 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1571 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | |||| ||||| |||||| | |||||||||||||||| ||||| || || || | Sbjct 1570 ACAACAATGATACCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAACAGCTGATTCA 1513 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 9698 ||| || |||| |||||| ||| | |||||| | ||| | |||| | | Sbjct 1512 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 1459 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 9756 | || |||||||| ||||||| || || ||||| || ||| || | | | |||| Sbjct 1458 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 1401 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 |||||||| || ||||| ||| || ||||||||||||||||||||||| Sbjct 1400 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACAAA 1350 >seq779604 Length=6485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 274/416 (66%), Gaps = 24/416 (6%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | ||||| || || ||||| ||||| | ||| | || ||||| Sbjct 3439 CGATCGAACCTCCCTGGCCGCAGAAGCGCCGAGTCAAGAACATCCGGCCTGTTGGTCGCA 3498 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 3499 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 3556 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTC 9698 | || || || |||| ||||| ||| | | ||| ||| |||| || ||| | | Sbjct 3557 TGATGGTCTGCTCCCTCTCATCGTTCCC---CCCACCCATACCGGCACCACGCTGCCTCC 3613 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACT 9754 | ||||| ||||||||||| |||||||||||||| || ||| || || | Sbjct 3614 CGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC---- 3669 Query 9755 TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 || ||||| |||| ||| || | |||||||| || || || | ||| || || | | Sbjct 3670 TCGAAGAGGTCCC--TCACCCTGGACGCGCCCACGCCGACGAAGAGCTCGACGAACTCAG 3727 Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 |||| || || |||||| || | || || || | ||| ||||| || || | Sbjct 3728 ACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCCAGCAGTG 3787 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 |||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 3788 TCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570003136200800