Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq78186 223 4e-53 >seq78186 Length=6745 Score = 223 bits (246), Expect = 4e-53 Identities = 590/877 (67%), Gaps = 37/877 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 319 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 378 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| ||| || Sbjct 379 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAAC 438 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 439 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 498 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 499 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 555 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 556 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 614 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 615 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 674 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 ||| || || | || || || ||||| ||| ||||| || | | ||||| Sbjct 675 CCCGGCCGTCCGCCGCAAGGCCGACTGGGCGCTGCGCTGGATCGACGGCGGGGAGCGC-- 732 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 733 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 792 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| ||||||||||||||||| | |||||||||||| Sbjct 793 TGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 852 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 853 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 910 Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || || | ||| | | || | |||| || || | || | || || Sbjct 911 TGCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTCTCGGAGGCCGTG-GAC 966 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 967 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTGGGCATGAACGGCGAC 1026 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 |||| |||||||| |||| ||||| |||||| |||||||| | ||| | Sbjct 1027 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGC----TGG-GCT 1081 Query 60324 GGACCAA--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 | | ||| | ||| || | ||||| ||||||||||||||| ||||||| || | | Sbjct 1082 GCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGG 1141 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||||||||| |||||||| ||||| || || Sbjct 1142 GCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 1178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536056694164800