Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq78186 156 5e-33 seq1751562 89.7 6e-13 seq1753327 86.0 7e-12 seq1750270 86.0 7e-12 seq1749016 86.0 7e-12 seq1746219 86.0 7e-12 seq1432349 86.0 7e-12 seq765187 86.0 7e-12 seq762195 86.0 7e-12 seq288442 86.0 7e-12 seq153233 86.0 7e-12 seq40028 86.0 7e-12 seq77197 84.2 2e-11 >seq78186 Length=6745 Score = 156 bits (172), Expect = 5e-33 Identities = 496/753 (66%), Gaps = 22/753 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | || ||||||| ||||||| Sbjct 1178 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 1119 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| | || ||| | |||| | | | | |||||||| | Sbjct 1118 CAGTCGAACGGGTTGGTGGCGTTGTACA---GCTTGTTGCAGCCCAGCGCCATGAGCAGG 1062 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | |||||||| |||| | | | |||||| | ||| | Sbjct 1061 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCG 1002 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG-GACAATCTT 74698 || || || || ||| || ||||| ||||| | || || | || | ||| |||| Sbjct 1001 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTC-CACGGCCTCCGAGACGATCTC 943 Query 74699 GTGAATGTCTTTGGAAGGG--CACTTTTCC-CTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | | | | ||| | || || || | |||| ||| || | || ||| | Sbjct 942 G---AAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGGCA-GGCGA 887 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | | || | || || || || | ||||| |||| Sbjct 886 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 827 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || |||||||| | ||| |||||||| |||||||| || |||||||||||| | Sbjct 826 TGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 767 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGT 74932 |||| || || |||||||| | ||| | ||||| || | | | | ||| ||||| Sbjct 766 CGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAGCGCTCC--CCGCCGTCGATCCAGCG 709 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 | | ||||| || || || || ||| || |||| || ||||| || ||||||||| Sbjct 708 CAGCGCCCAGTCGGCCTTGCGGCGGACGGCCGGGATGGTGTCGATGGCGCGGAAGAGGCG 649 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 ||||||| || || || | | || || | || |||||| |||| || || Sbjct 648 GTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTG 589 Query 75053 AATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 || |||| || ||| |||| | ||||||| | || ||||| || | ||| || | Sbjct 588 GATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGT 530 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | || | | ||| ||||| | ||||||||||| ||||||||||| || | Sbjct 529 CGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGG 470 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 | || || ||| ||||||||||| |||| Sbjct 469 CGAGCACGTGGGAGATGAAGTGGCGCTCGTCGT 437 >seq1751562 Length=9845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1875 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1816 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 1815 TGAGCTATGAAAGCAA 1800 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3771 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3712 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 3711 TGAGCTATGAAAGCAA 3696 >seq1753327 Length=6259 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 516 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 575 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 576 TGAGCTATGAAAGC 589 >seq1750270 Length=4248 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1883 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1942 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1943 TGAGCTATGAAAGC 1956 >seq1749016 Length=1607 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1201 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1142 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1141 TGAGCTATGAAAGC 1128 >seq1746219 Length=8419 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4941 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4882 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4881 TGAGCTATGAAAGC 4868 >seq1432349 Length=906 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 431 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 372 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 371 TGAGCTATGAAAGC 358 >seq765187 Length=8785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4163 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4222 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4223 TGAGCTATGAAAGC 4236 >seq762195 Length=11161 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3726 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3785 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3786 TGAGCTATGAAAGC 3799 >seq288442 Length=14964 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 13709 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13650 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 13649 TGAGCTATGAAAGC 13636 >seq153233 Length=10223 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5560 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5501 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5500 TGAGCTATGAAAGC 5487 >seq40028 Length=5799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2872 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2931 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 2932 TGAGCTACGAGAGC 2945 >seq77197 Length=7682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 79626 GCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATT 79684 |||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| | Sbjct 1512 GCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACT 1453 Query 79685 GAGCTACGAAAGC 79697 |||||| |||||| Sbjct 1452 GAGCTATGAAAGC 1440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534777643516000