Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq57095 221 1e-52 seq213450 165 1e-35 seq57117 131 2e-25 seq36335 123 3e-23 seq856698 122 1e-22 seq761979 91.5 2e-13 seq788035 87.8 2e-12 >seq57095 Length=8353 Score = 221 bits (244), Expect = 1e-52 Identities = 296/412 (72%), Gaps = 0/412 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 412 TTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 353 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 352 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCG 293 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 292 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 233 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 232 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 173 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 172 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 113 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | || || | ||||||||| Sbjct 112 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGC 53 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTG 176617 || ||||||||||||||| | || || || ||||| |||||||||||| ||| Sbjct 52 TTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTG 1 >seq213450 Length=3525 Score = 165 bits (182), Expect = 1e-35 Identities = 210/287 (73%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 176548 CCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607 ||||| ||||||||| || ||||||||||||||| | || || || ||||| |||||| Sbjct 3242 CCATT-GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 3300 Query 176608 TTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGA 176667 |||||| ||||||| || ||||||||||||| | ||||| | ||| || ||| | || Sbjct 3301 TTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGT 3360 Query 176668 GTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCT 176727 ||||| ||||| || | || || || ||| || ||||| || | || || || Sbjct 3361 GTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGG-TTCCATGGTAGTT-- 3417 Query 176728 TCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAA 176787 | | || || || || ||||| ||||| || | ||||||||||| || ||| Sbjct 3418 ----TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAA 3473 Query 176788 GAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCG 176834 || |||||||| || || ||||| ||||| || ||||| ||||| || Sbjct 3474 GAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 3520 >seq57117 Length=3262 Score = 131 bits (144), Expect = 2e-25 Identities = 202/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || ||||| || ||| || | ||||| | | ||| || || Sbjct 952 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACACCAGAGCGTTTCCGAGGGCG 893 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | ||||| || || Sbjct 892 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGTCCGAT 833 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| || ||||||||| | |||| || | | || | ||| || | | Sbjct 832 AGATCTACCCGTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGAAAACAATTGCTTA 774 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || || || || || ||||| || |||| Sbjct 773 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGCAATTGTGTTGAGTACTGTCCAA 714 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||| |||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 713 CAAGCTGTTTATCAATGACTGAAGAATATGAACTTTCTACCTATGA 668 >seq36335 Length=20465 Score = 123 bits (136), Expect = 3e-23 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||||| || ||||||||||||| | | || || || ||||| |||||||||||| Sbjct 3512 GGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTATG 3453 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAG 176671 |||||||||| |||||||||||||| || ||||| |||||||| ||| | || |||| Sbjct 3452 ATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 3395 >seq856698 Length=257 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 176956 AACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGG 177015 || |||||||| |||||||| ||||| | || | ||| || ||| ||| ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 177016 GGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 177075 | |||||| | |||||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 177076 AACTTCCCACTTGACCTTGCTGCTG 177100 |||||||| || ||| | ||||||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTG 147 >seq761979 Length=10221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 176240 ATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCT 176299 |||| || | ||||| |||| || | | ||| |||| |||| |||||| || |||| Sbjct 477 ATATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCT 418 Query 176300 CAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAG 176359 | || || | | || | || | | ||| | | ||||| |||||||| || ||| Sbjct 417 CTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAG 358 Query 176360 CAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACT 176419 ||| | ||||| || ||| | |||||||| || || || | || || | || |||| Sbjct 357 TTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACT 298 Query 176420 TCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCA 176479 || | | ||| | | ||| ||||| | | | ||||||||||| | | || || | Sbjct 297 TCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTA 238 Query 176480 TGCGTCCTTGGATCTGTGTTGCATA 176504 ||| |||||| || ||||||||| Sbjct 237 TGCATCCTTGAATTGTTGTTGCATA 213 >seq788035 Length=1366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||||||||| || ||||| ||||| || || |||||||| ||||| | ||||| || Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTT 176889 || | | |||||||| |||||| ||| || ||||| | | | ||||||||| | Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077 Query 176890 GCAGCATTCCCAG 176902 || || ||| ||| Sbjct 1078 GCTGCTTTCTCAG 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589776821414400