Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq1645161 461 6e-125 >seq1645161 Length=309 Score = 461 bits (510), Expect = 6e-125 Identities = 263/268 (98%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 119779 ATCTGAAATATTAAGGGGACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGT 119838 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 268 ATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGT 209 Query 119839 TCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTA 119898 ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| Sbjct 208 TCAAGAATATGCCCCAATTTTTTATCAAATTTGGAAGAAAAAGAATCAAAAAGCTTATTA 149 Query 119899 CAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCG 119958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 CAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCG 89 Query 119959 TGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCA 120018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 TGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCA 29 Query 120019 TTCAGCATATGCGTTTATCAAACGTCTC 120046 ||||||||||||||||||||||| |||| Sbjct 28 TTCAGCATATGCGTTTATCAAACATCTC 1 Score = 457 bits (506), Expect = 7e-124 Identities = 262/268 (98%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 127086 ATCTGAAATATTAAGGGGACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGT 127145 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 268 ATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGT 209 Query 127146 TCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTA 127205 ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| Sbjct 208 TCAAGAATATGCCCCAATTTTTTATCAAATTTGGAAGAAAAAGAATCAAAAAGCTTATTA 149 Query 127206 CAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCG 127265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 CAAATGGCGTATTGATGAGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCG 89 Query 127266 TGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCA 127325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 TGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCA 29 Query 127326 TTCAGCATATGCGTTTATTAAACGTCTC 127353 |||||||||||||||||| |||| |||| Sbjct 28 TTCAGCATATGCGTTTATCAAACATCTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399543044812940