Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq752483 107 1e-18 seq5304 107 1e-18 seq1743593 104 2e-17 seq765366 102 5e-17 seq750497 98.7 7e-16 seq8128 98.7 7e-16 seq7669 98.7 7e-16 seq1033180 93.3 3e-14 seq164858 89.7 3e-13 seq752332 84.2 1e-11 seq184930 82.4 5e-11 >seq752483 Length=2742 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| ||||| || Sbjct 756 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTTGAGGGTTCG 815 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| ||||| | || | || ||||| || || | || || || || Sbjct 816 GATACCATTGACAATGTTAAAGCCAAGA-TTCAGGACAAGGAGGGCATCCCTCCGGACCA 874 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | |||||||| ||||| || || || || | || || || | ||||||||| Sbjct 875 ACAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACATTGGCCGATTACAA 934 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 935 CATCCAAAAGGAGTCTAC 952 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || || ||||| || || || | Sbjct 984 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATAACTCTAGAGGTCGAGAGTTCT 1043 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||| || || | || ||||| || Sbjct 1044 GACACCATTGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCACCAGACCA 1102 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || |||||||||||||| | ||||| || | |||||||| Sbjct 1103 ACAGAGGCTTATCTTTGCTGGGAAACAACTGGAAGATGGCCGCACCTTGGCTGATTACAA 1162 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1163 CATTCAGAAGGAGTCCAC 1180 >seq5304 Length=2956 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| ||||| ||| | Sbjct 901 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAGTCCTCC 842 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | | || || || Sbjct 841 GACACAATTGACAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCTTCCGGACCA 783 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||||||||| || || || || | |||||| | | |||||||| Sbjct 782 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTTGCAGATTACAA 723 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 722 CATTCAGAAGGAGTCCAC 705 >seq1743593 Length=9171 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| || || || || || | Sbjct 1770 ATGCAGATCTTTGTGAAGACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGTCTTCT 1711 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | || || || ||| | ||||| || || Sbjct 1710 GACACAATTGACAATGTCAAGGCAAAGA-TCCAGGATAAGGAGGGTATCCCGCCGGACCA 1652 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || || | |||||| | | ||||| || Sbjct 1651 ACAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACTCTTGCTGATTATAA 1592 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||||||||| | || || ||| Sbjct 1591 CATCCAGAAAGAGTCCACCCTCCACTTGGTT 1561 >seq765366 Length=14197 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||||| || || || || | Sbjct 772 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 713 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 712 GACACGATTGACAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCA 654 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| ||||| || || || || | ||||| | | ||||||||| Sbjct 653 GCAGCGGTTGATCTTTGCGGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCCGATTACAA 594 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 593 CATCCAGAAGGAGTCCAC 576 >seq750497 Length=14261 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||| || || ||||| || | Sbjct 11290 ATGCAGATATTTGTCAAGACCCTCACGGGGAAGACAATCACCCTGGAGGTTGAGTCTTCT 11231 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 11230 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 11171 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||||||||| || || || || | ||||| | | ||||||||| Sbjct 11170 CAACGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCGGATTACAAC 11111 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | || ||||| | ||| | || || || Sbjct 11110 ATCCAGAAGGAGTCCACCCTCCACTTAGTGCTCAGGCTCCGTGGTGG 11064 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| || || || ||||| || || ||||| || | Sbjct 11062 ATGCAGATTTTTGTTAAGACCCTCACCGGGAAGACCATCACCCTGGAGGTTGAGTCTTCT 11003 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| || || | || || || || Sbjct 11002 GACACCATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 10943 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || || || || || || | ||||| || | || |||||| Sbjct 10942 CAGCGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 10883 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 10882 ATCCAGAAGGAATCCAC 10866 >seq8128 Length=3827 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || || ||||| || || || || || Sbjct 3292 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACTCTGGAGGTCGAGTCTTCG 3351 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || || || || Sbjct 3352 GATACCATTGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCTCCGGACCA 3410 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| ||||| || || || |||| |||||| | | |||||||| Sbjct 3411 GCAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCGGATTACAA 3470 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3471 CATTCAGAAGGAGTCTAC 3488 >seq7669 Length=6130 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| || || || ||||| || || || || ||| || Sbjct 5788 ATGCAGATTTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 5847 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 5848 GACACCATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 5907 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || || || || | ||||| | | || |||||| Sbjct 5908 CAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 5967 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 5968 ATCCAGAAGGAGTCCAC 5984 >seq1033180 Length=366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||| || || ||||| ||| | Sbjct 269 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 210 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | || ||| | || | || ||| ||||| || || | || || || || Sbjct 209 GACATGATCGACAATGTCAAGGC-GAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 151 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || |||| ||||| ||| || ||||| Sbjct 150 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACCCTAGCAGACTACAA 91 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 90 CATCCAGAAGGAGTCCAC 73 >seq164858 Length=2471 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || || || || ||| | Sbjct 2355 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCA 2296 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 2295 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAG 2236 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || | ||||| | | || |||||| Sbjct 2235 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAAC 2176 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | || | || | ||| |||| ||||| Sbjct 2175 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTGCGTGGAGG 2129 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| | || || || ||| || Sbjct 2127 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 2068 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 2067 GACACCATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 2009 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || || || | ||||| | | || ||||| Sbjct 2008 GCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGACTACAA 1949 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1948 CATCCAGAAGGAGTCTAC 1931 >seq752332 Length=10290 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || |||||||| || ||||| | | Sbjct 4829 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCT 4770 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 4769 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCA 4711 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || ||||| || | ||||| | | || ||||| Sbjct 4710 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAA 4651 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 4650 CATCCAGAAGGAGTCCAC 4633 >seq184930 Length=1266 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || || || || ||||| | || || || ||| | Sbjct 93 AATGCAGATTTTCGTCAAGACACTGACCGGCAAGACCATCACCTTGGAGGTCGAGTCCTC 152 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| || || | || || || || Sbjct 153 GGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| |||| || ||||| || || || || || | ||||| | | || ||||| Sbjct 213 GCAGCGCCTAATCTTCGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 272 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 273 CATCCAGAAGGAGTCCAC 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330518633357360