Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= NC_031091.1
Length=43277
Score E
Sequences producing significant alignments: (Bits) Value
seq1035 150 5e-32
>seq1035
Length=564
Score = 150 bits (166), Expect = 5e-32
Identities = 320/474 (68%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 9973 GCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTGCGAAACTGAGCGTGAC 10032
||| |||||||| || || ||||| ||| |||| || |||| | || |||| | || ||
Sbjct 11 GCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCAC 70
Query 10033 CTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCCAGCCCGACCGGCTA 10092
|| || ||||||||||||||||| || || | ||||| || || | |||||
Sbjct 71 GTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTT 130
Query 10093 CAGCGGCGATGACA-TACGCGACTTGATGCTGGAAAGCGTGGAGAAGCGTTTTGGCGACC 10151
|| | | || ||| ||| ||| | ||||||| | ||||| || || ||| ||
Sbjct 131 CAACAGTGA-AACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACG 189
Query 10152 TACTGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCGCTGAAC 10211
|| ||| | | || ||| | ||||| | ||||| ||||| |||| ||| |
Sbjct 190 ATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATG 249
Query 10212 AGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTACGCAGCC 10271
| || |||| ||| || || | | || || | || || |||| |||| || || |
Sbjct 250 AAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTC 309
Query 10272 CGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGC 10331
|| |||| ||||| || |||||||||||||| || || || ||||| |||||| |
Sbjct 310 CGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTA 369
Query 10332 ACATGCCCAAGCCGGATCG---AGAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGC 10388
||||||||| || || | | | |||| | ||||| | || |||||||
Sbjct 370 TCATGCCCAAACCAGACGGGTTAACGGCAGCAAAG---AACCTTGCAGAGGCGTTCGAGC 426
Query 10389 ATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAAT 10442
|||| ||||| ||||||||| || || || || |||||||| ||||||
Sbjct 427 ATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAT 480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135376986829560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |