Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1035 150 5e-32 >seq1035 Length=564 Score = 150 bits (166), Expect = 5e-32 Identities = 320/474 (68%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 9973 GCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTGCGAAACTGAGCGTGAC 10032 ||| |||||||| || || ||||| ||| |||| || |||| | || |||| | || || Sbjct 11 GCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCAC 70 Query 10033 CTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCCAGCCCGACCGGCTA 10092 || || ||||||||||||||||| || || | ||||| || || | ||||| Sbjct 71 GTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTT 130 Query 10093 CAGCGGCGATGACA-TACGCGACTTGATGCTGGAAAGCGTGGAGAAGCGTTTTGGCGACC 10151 || | | || ||| ||| ||| | ||||||| | ||||| || || ||| || Sbjct 131 CAACAGTGA-AACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACG 189 Query 10152 TACTGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCGCTGAAC 10211 || ||| | | || ||| | ||||| | ||||| ||||| |||| ||| | Sbjct 190 ATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATG 249 Query 10212 AGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTACGCAGCC 10271 | || |||| ||| || || | | || || | || || |||| |||| || || | Sbjct 250 AAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTC 309 Query 10272 CGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGC 10331 || |||| ||||| || |||||||||||||| || || || ||||| |||||| | Sbjct 310 CGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTA 369 Query 10332 ACATGCCCAAGCCGGATCG---AGAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGC 10388 ||||||||| || || | | | |||| | ||||| | || ||||||| Sbjct 370 TCATGCCCAAACCAGACGGGTTAACGGCAGCAAAG---AACCTTGCAGAGGCGTTCGAGC 426 Query 10389 ATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAAT 10442 |||| ||||| ||||||||| || || || || |||||||| |||||| Sbjct 427 ATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAT 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135376986829560