Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq747945 113 3e-20 seq1752447 82.4 5e-11 >seq747945 Length=243 Score = 113 bits (124), Expect = 3e-20 Identities = 150/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 88239 TGAAGAACCATTGTCCGCCATTCATTAGCCAGTTATTCACGTTGCCAT-CTG-GACTTAA 88296 |||||||||| ||||| || ||||||| || ||||| |||| || || || Sbjct 220 TGAAGAACCACACGCCGCCGTTTTCCAGCCAGTGGTTAACGTTTCCATACTCCGA--TAG 163 Query 88297 CGCATCAATCATCAGCCGCTCATGGTTCCCCATCACTGCCCTGAACCAGGGCATCTGCAA 88356 | |||||||||||| | |||||||||| || ||| |||| |||||| ||||| | || Sbjct 162 CCCATCAATCATCATCTGCTCATGGTTACCTCGCACAGCCCGGAACCAAGGCAT-AGTAA 104 Query 88357 T-AGTTCCAGACATTCGACATTTTCAGTACCGCGATCGATAAGGTCGCCGACCGATATCA 88415 | || ||||| || ||||| ||||| | ||||| || | |||||| || ||||| |||| Sbjct 103 TCAGCTCCAGGCACTCGACGTTTTCCGCGCCGCGGTCAACAAGGTCTCCAACCGAAATCA 44 Query 88416 GTAAATCCTGCGCCGGGTCAAA 88437 | ||||| ||| ||||| || Sbjct 43 GCAAATCACACGCAGGGTCGAA 22 >seq1752447 Length=2026 Score = 82.4 bits (90), Expect = 5e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 69702 AACCCTTAAGATAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTC 69751 ||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1534 AACCCTTAATACAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTC 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323565813997720