Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq45179 421 8e-113 seq57095 277 2e-69 seq213450 179 4e-40 seq155648 145 9e-30 seq856698 134 2e-26 seq352821 122 1e-22 seq761979 113 5e-20 seq36335 98.7 1e-15 seq79754 91.5 2e-13 seq1813671 89.7 6e-13 >seq45179 Length=9647 Score = 421 bits (466), Expect = 8e-113 Identities = 545/750 (73%), Gaps = 2/750 (0%) Strand=Plus/Minus Query 186225 CGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTC 186284 || |||| ||| | || || || |||| |||||| || |||||||| || ||||| || Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 186285 ATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAA 186343 |||||||||||| | || || |||||| | ||| ||| | | | || || || || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAA 9519 Query 186344 TGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCT 186403 ||| || | || |||||||| || ||||| |||||| ||||||||| || || || || Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 186404 TGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCT 186463 || || || |||||||| || || ||||| || ||||| || ||| ||||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 186464 GTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGC 186523 | ||| |||||||||| || || ||||||||||| ||||| || |||||||| || || Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 186524 AGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCT 186583 || | | || | |||||||| | || || ||||| | || |||||||| ||||| Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 186584 TTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGA 186643 | ||| || || || ||||| || ||| || || | | || |||| ||||| Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 186644 AACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAG 186703 ||| ||||| ||||||||||| ||| | || ||||| || ||||| || |||| ||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 186704 CAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTC 186763 |||||| |||||| | |||||||| ||||| ||||| || || | ||| | |||| Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 186764 TTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGA 186823 | | |||||| | |||| | ||||| ||| | ||||| ||||||||||| ||||| Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 186824 GGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAA 186883 | | ||||| || |||||||| || ||||| ||||| ||||| ||||| || || || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 186884 TGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCC 186943 || ||| | ||||| ||||||||| | |||||| || |||||||| || |||| || Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 186944 TGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || || | ||| | || |||||||| Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 277 bits (306), Expect = 2e-69 Identities = 367/507 (72%), Gaps = 2/507 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || |||||| | || || || || | || ||||| || | Sbjct 506 CTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTT 447 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || | |||||| ||||||| | Sbjct 446 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 388 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || | | |||||||||| Sbjct 387 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 328 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || ||||||||||| || ||||| |||| || || ||| | ||||| || || | Sbjct 327 ATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 268 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||||||| | || || ||||||||||| | || | | Sbjct 267 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 208 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || || |||||||||||||||||| | || || Sbjct 207 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 148 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| |||||||| |||||||| |||||| ||| || |||||||| ||||| || | Sbjct 147 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 88 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || | || ||| | |||||||| ||| |||||||||||| | || | Sbjct 87 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 183674 TCAGTGGCACCTTTAACTATATGCTTG 183700 || ||| || || |||| |||| ||| Sbjct 27 TCTCTGGTACTTTCAACTTTATGATTG 1 Score = 114 bits (126), Expect = 2e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | | ||||| || || ||||| || |||||||| || | || | Sbjct 8099 TGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 8158 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 8159 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 8218 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || ||||| ||| || | || ||| |||||| | || ||||||| Sbjct 8219 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAG 8278 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || || ||||| | | | | || ||| | | ||||| ||||| || || | | Sbjct 8279 TTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCAC 8338 Query 186211 AAGGAGAT 186218 |||||||| Sbjct 8339 AAGGAGAT 8346 >seq213450 Length=3525 Score = 179 bits (198), Expect = 4e-40 Identities = 225/308 (73%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 183610 ACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTG 183669 || ||||| ||| || | || || | |||||||| ||| |||||||||||| | Sbjct 3220 ACTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTA 3279 Query 183670 GGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 183729 || ||| ||| || || |||| |||| |||| || || |||||||||||||| | ||| Sbjct 3280 GGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATG 3339 Query 183730 CACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATG 183789 || | || |||||| | ||||| |||||||| |||| ||||| || |||| ||| ||| Sbjct 3340 CATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATG 3399 Query 183790 CACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAAC 183849 || ||||| ||| || || || | | ||||| ||||| ||| || || Sbjct 3400 CATGGTTCCATGG-TAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAAT 3452 Query 183850 TATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATAC 183909 | |||||||| || |||||||| |||||||| || || ||||| ||||||||||| || Sbjct 3453 GAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTAT 3512 Query 183910 TTTGGTCG 183917 ||||| || Sbjct 3513 TTTGGCCG 3520 >seq155648 Length=2022 Score = 145 bits (160), Expect = 9e-30 Identities = 217/308 (70%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 186357 TCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCA 186416 |||||||| || ||| | |||||| |||||||| || || || | || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 186417 TGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAA 186476 |||||||| || || ||||| || ||| | || || ||||| | | ||| ||||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 186477 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGT 186536 ||||| || || ||||||||||| ||||| || |||||||| || || || | | || Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 186537 GGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGC 186596 | |||||| | || || ||||| | || |||||||| ||||| | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 186597 GAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATG 186656 || ||||| || ||| || || | | || |||| |||||||| ||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 186657 GTCACTGC 186664 |||||||| Sbjct 1722 GTCACTGC 1715 >seq856698 Length=257 Score = 134 bits (148), Expect = 2e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 184039 AATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGG 184098 |||||||| || |||||||| || | ||||| |||||||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 184099 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 184158 || || | ||||||||||| ||||| |||||||| ||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 184159 AACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 ||||||||||| ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq352821 Length=202 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 186768 ATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTG 186827 |||||| | |||| | ||||| ||| | ||||| ||||||||||| ||||| | Sbjct 18 ATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATC 77 Query 186828 AGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAA 186887 | ||||| || |||||||| || || || ||||| ||||| ||||| || || || || Sbjct 78 CGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACGAG 137 Query 186888 GGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAA 186947 ||| | ||||| ||||||||| | |||||| || |||||||| || |||| ||||| Sbjct 138 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 197 Query 186948 GAAGT 186952 || || Sbjct 198 GAGGT 202 >seq761979 Length=10221 Score = 113 bits (124), Expect = 5e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 183364 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCAC 183423 |||| |||||| || ||||||||||| || ||||| |||| | | || | | ||| Sbjct 436 TATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCAC 377 Query 183424 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTAC 183483 || || || || || ||| ||||| | ||||||||| | || || ||||||||||| Sbjct 376 TTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 317 Query 183484 CAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAA 183543 | || | | || |||||| | |||| || || || |||||| |||||| |||| Sbjct 316 GAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAA 257 Query 183544 TTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTAT 183588 | || |||||| ||||||| |||||| || |||||| ||| Sbjct 256 CTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATAT 212 >seq36335 Length=20465 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 183611 CCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGG 183670 || || | ||| || | || ||| | |||||||| ||| ||||||||||| | | Sbjct 3538 CCACTTTGTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAG 3479 Query 183671 GTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 183730 | ||| || || || |||| |||| |||| ||||| ||||||||||||||||| |||| Sbjct 3478 GAATCTCCGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGC 3419 Query 183731 ACCCCTTCCACATGCTGGGTGT 183752 | || ||||||||| | ||||| Sbjct 3418 ATCCATTCCACATGTTAGGTGT 3397 >seq79754 Length=5746 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| ||||||||||| ||| | || ||||| || ||||| Sbjct 4820 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTT 4879 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGT 186739 | |||| ||| |||||| ||||| | |||||||| ||||| ||||| Sbjct 4880 GATGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGT 4929 >seq1813671 Length=280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 || || |||||||||||| ||||||| || |||||| |||||||| |||||||| | Sbjct 53 TGTTATATGGGTCGTGAGCGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTT 112 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCT 183633 ||||| ||| || | |||||| ||||| || ||||| ||| || | || ||| Sbjct 113 GTTGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607930584290400