Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq45179 461 8e-125 seq57095 316 2e-81 seq213450 167 3e-36 seq155648 167 3e-36 seq856698 120 3e-22 seq761979 116 4e-21 seq79754 116 4e-21 seq36335 100 3e-16 seq34999 91.5 2e-13 seq1813671 86.0 7e-12 >seq45179 Length=9647 Score = 461 bits (510), Expect = 8e-125 Identities = 556/754 (74%), Gaps = 2/754 (0%) Strand=Plus/Minus Query 165417 CGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTT 165476 || ||||| ||| | || || || ||||||||||| || |||||||| || |||||||| Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 165477 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAA 165535 |||||||||||| | ||||| |||||||| || || || || | | || ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAA 9519 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| || | ||||||||||| |||||||| || ||| ||| || ||||| ||||| || Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655 ||| ||||| |||||||| || ||| || || || ||||| || || |||||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGC 165715 || ||| ||||||| || ||||| |||||| |||| || ||||| |||||||| || || Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 165716 AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 165775 || | ||||||| || |||| | || |||||||| | || ||||| || ||| | Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 165776 GTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGA 165835 | ||| || ||||| ||||| || ||| || ||| | ||||| | || || Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 165836 AACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 165895 ||||||||| ||||||||||||||||| || ||||| || || |||||| ||||||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955 |||||| |||||| | || ||||||||||| ||||| || |||| || | |||| || Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 166015 | ||||||| | |||| | || || || | ||||| ||||| ||||| || ||||| Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 166016 GATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAA 166075 || | || || || ||||| || ||||| || ||||| || ||||| || || | || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 166076 TGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCC 166135 || || | ||||| ||| |||| || || || |||||||| || || | ||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 166136 TGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||| || || | ||| | || ||||| |||||| Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 8885 >seq57095 Length=8353 Score = 316 bits (350), Expect = 2e-81 Identities = 372/498 (75%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| || || |||||| | || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || ||||||||||||| ||| | Sbjct 445 ATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCC 388 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || || || || ||||||| | | |||||||||| Sbjct 387 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 328 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || |||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| | Sbjct 327 ATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 268 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | | || || ||| | ||||| |||||||||| | || ||| Sbjct 267 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 208 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| ||||||||||||||||||||| || || Sbjct 207 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 148 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || |||||||| || || || | || Sbjct 147 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 88 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || | || ||| | |||||||| || ||||||| |||||| | || | Sbjct 87 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 164406 TCTCTGGAACCTTCAACT 164423 ||||||| || ||||||| Sbjct 27 TCTCTGGTACTTTCAACT 10 Score = 145 bits (160), Expect = 8e-30 Identities = 183/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || || |||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT-ACTGCGGCAGT 165343 ||||| || ||| | || ||||||||| | || ||| || |||||| || || ||||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279 Query 165344 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 165403 |||||| || || | | | | || ||| | |||| |||||||| || || | || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 165404 AGGGGACTT 165412 ||| || || Sbjct 8340 AGGAGATTT 8348 >seq213450 Length=3525 Score = 167 bits (184), Expect = 3e-36 Identities = 221/306 (72%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 164344 TGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGG 164403 ||| || ||| || | || || | |||||||| || ||||||| |||||| | || Sbjct 3222 TGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGG 3281 Query 164404 CATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCA 164463 |||||||| || ||||||| ||| | || || ||| | |||||||||||| | ||||| Sbjct 3282 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCA 3341 Query 164464 CCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCA 164523 | || || ||| | || ||||| ||||| || | |||||| || |||| ||| ||||| Sbjct 3342 TCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA 3401 Query 164524 CGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTA 164583 ||||| ||| || || || | | || || || |||||||| ||| || | Sbjct 3402 TGGTTCCATGG-TAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGA 3454 Query 164584 TGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTT 164643 |||||||| |||||||| || ||||| || || || || || || ||||| ||||| || Sbjct 3455 GGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTT 3514 Query 164644 TGGTCG 164649 ||| || Sbjct 3515 TGGCCG 3520 >seq155648 Length=2022 Score = 167 bits (184), Expect = 3e-36 Identities = 223/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 165549 TCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCC 165608 |||||||| |||||| | || ||| || || ||||| ||||| | ||| ||||| Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 165609 TGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAA 165668 |||||||| || ||| || || || ||| | || || |||||| | || ||| ||||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 165669 GGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGC 165728 || || ||||| |||||| |||| || ||||| |||||||| || || || | |||||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 165729 GGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGT 165788 | | ||| | || |||||||| | || ||||| || ||| | | ||| || ||| Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 165789 GAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATG 165848 || ||||| || ||| || ||| | ||||| | || ||||||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 165849 GTCACTGCTA 165858 |||||||||| Sbjct 1722 GTCACTGCTA 1713 >seq856698 Length=257 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 164771 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGG 164830 || |||||||| |||||||| || | | ||| |||| ||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 164831 GCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 164890 || || | ||||||||||| || || |||||||| ||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 164891 AACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 ||||||||||| ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq761979 Length=10221 Score = 116 bits (128), Expect = 4e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 164096 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 164155 |||| |||||| || |||||||||||| |||| ||| |||| | | ||| ||||| Sbjct 436 TATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCAC 377 Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215 || ||||| || || ||| ||| | || || ||| | ||||| |||||||||| Sbjct 376 TTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 317 Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 164275 | || || | || |||||| | |||| | | ||| |||||| |||||| |||| Sbjct 316 GAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAA 257 Query 164276 CTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATA 164319 ||| || |||||| ||||||| |||||| ||| || ||||| Sbjct 256 CTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 >seq79754 Length=5746 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| | || ||||||||||| |||||||||||||||||||| ||||| || || ||| Sbjct 4820 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTT 4879 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 | | ||||||| |||||| ||||| | || ||||||||||| ||||| | |||| Sbjct 4880 GATGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGTACTCGTCACT 4939 Query 165942 GGACTTTGGACAAGTTCTATTG 165963 || | |||| ||| |||||| Sbjct 4940 GGTTTATGGATGAGTGCTATTG 4961 >seq36335 Length=20465 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 164349 TGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCT 164408 ||||| || | || ||| | |||||||| || ||||||| |||| | | || |||| Sbjct 3532 TGTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCT 3473 Query 164409 CTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCT 164468 | || || ||||||| ||| | || |||||||| |||||||||||||| ||||| || | Sbjct 3472 CCGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCAT 3413 Query 164469 TCCATATGCTCGGCGTAG 164486 |||| ||| | || |||| Sbjct 3412 TCCACATGTTAGGTGTAG 3395 >seq34999 Length=3418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 498 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 557 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGG-ACTACTTTCGTCACGAGTTG 165283 || ||||||| ||||| | ||||||||| ||| ||| | | | || || ||| Sbjct 558 CCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTATAGGGAAAAAAAATTGTAACTTCTTG 617 Query 165284 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT 165320 |||||| || | | | || ||||||||| | || ||| Sbjct 618 GTATACCCATGAATTGGCAAGTTCCTATTTGGAAGGT 654 >seq1813671 Length=280 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| |||||||||||| ||||| || || |||||| |||||||| ||||||||| || Sbjct 55 TTATATGGGTCGTGAGCGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGT 114 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCT 164365 ||||| || |||| ||| || || || | ||| || ||| || | || ||| Sbjct 115 TGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544978776074400