Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq45179 446 2e-120 seq57095 284 1e-71 seq213450 167 3e-36 seq155648 154 2e-32 seq856698 122 1e-22 seq352821 109 6e-19 seq79754 102 9e-17 seq761979 98.7 1e-15 seq36335 95.1 1e-14 seq788035 93.3 5e-14 >seq45179 Length=9647 Score = 446 bits (494), Expect = 2e-120 Identities = 545/741 (74%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171 ||| | || || |||||| ||||||| || |||||||| || || || || ||||||||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230 ||| | || || |||||| | || || ||| || | | || ||||| ||||||||| | Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTC 9510 Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290 || ||||||||||||||||| ||||| ||||| || || || ||||| || || || || Sbjct 9509 ATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATC 9450 Query 179291 CTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCT 179350 ||||||||||||||| ||||| || |||||||| || || ||| | || ||| | Sbjct 9449 TGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTT 9390 Query 179351 ACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCT 179410 || || || || || |||||| | ||||| || || |||||||| || || || | | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 179411 GGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGA 179470 |||| || |||| || || |||||||| || || ||||| ||||| || ||||| || Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 179471 CAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTC 179530 | |||| ||||||| ||| || || | || || |||| || || || ||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 179531 GATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCG 179590 ||||| ||||| ||||| || ||||| || ||||||||| | || || |||||| || Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 179591 TTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGG 179650 |||| |||||||||||||| | ||||| || |||| ||| | |||| | ||||| Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 179651 TATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGC 179710 | |||| | || || ||| | | || |||||||||||||| || || ||| | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 179711 GGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCT 179770 || || |||||||| || ||||| ||||| ||||| || || || || || || ||| | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 179771 ACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 179830 ||||| ||||||||| | ||||| || |||||||| || |||| ||||| || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 179831 ATTGCCAAGAGGCAACGCTCT 179851 | ||| | || |||||||| Sbjct 8909 TCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 284 bits (314), Expect = 1e-71 Identities = 368/506 (73%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| ||| | |||||||| || |||| ||||||||||| || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||| ||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || ||||||||| || ||||| ||||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | ||||||||| | |||||||||||||||| | || || | Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || |||||||| || ||||| ||| ||||| || ||||| || || || || |||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | |||| ||| | |||||||| || ||||| | |||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 178077 CAGTGGCACCTTCAACTACATGCTTG 178102 | ||| || ||||||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 Score = 113 bits (124), Expect = 5e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTT 178909 ||||||||| ||| | | || || ||||||||||| || ||||| || || | || || Sbjct 8101 GATGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTT 8159 Query 178910 CCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTG 178969 ||| |||||| | || | || |||||| | || || ||||| || || || || || Sbjct 8160 TCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTG 8219 Query 178970 GTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGT 179029 |||||| || || | || ||| ||| | || || ||||||||| | || || || || Sbjct 8220 GTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAGT 8279 Query 179030 ATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCA 179089 || || ||||| | | | | ||| || | | || |||||||| |||||||| || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 179090 GGGAGATTT 179098 |||||||| Sbjct 8340 AGGAGATTT 8348 >seq213450 Length=3525 Score = 167 bits (184), Expect = 3e-36 Identities = 224/309 (72%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 178013 CTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGG 178072 ||||||| ||| | |||| || | |||||||| || ||||| | |||||| | | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 178073 GTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 178132 | ||| ||| || ||||||| ||| |||| || || |||||||||||||| | |||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 178133 ACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGC 178192 | | || |||||||| || || |||||||| || | ||||| || |||| ||| |||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 178193 ACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AA 178250 | ||||| ||| || || || | | ||||| || || || ||| || | || Sbjct 3401 ATGGTTCCATGG-TAGTT------TGATCAGGGAAACTACTGAAAATGAA--TCCGCTAA 3451 Query 178251 CTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTA 178310 | |||||||| || |||||||| |||||||| || || || || |||||||||||||| Sbjct 3452 TGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTA 3511 Query 178311 CTTCGGTCG 178319 || || || Sbjct 3512 TTTTGGCCG 3520 >seq155648 Length=2022 Score = 154 bits (170), Expect = 2e-32 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 179235 TCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCG 179294 ||||||||||||||| | ||||| | || || || || ||||| | || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 179295 TGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAG 179354 ||||||||||||||| ||||| || ||| |||| || || ||| | || ||| | || Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 179355 GGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGC 179414 || || || || |||||| | ||||| || || |||||||| || || || | | ||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 179415 GGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGT 179474 | | ||| || || |||||||| || || ||||| ||||| || ||||| ||| || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 179475 GACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATG 179534 || ||||||| ||| || || | || || |||| || || || ||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 179535 GTTACTGC 179542 || ||||| Sbjct 1722 GTCACTGC 1715 >seq856698 Length=257 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 178441 AACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGG 178500 || |||||||| |||||||| || | | |||||||| || || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 178501 GCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCAC 178560 || || | ||||||||||| |||||||||||||| ||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 178561 AACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||||||||||| ||| | ||||||| |||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGAA 152 >seq352821 Length=202 Score = 109 bits (120), Expect = 6e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 179656 TTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAG 179715 |||| | || || ||| | | || |||||||||||||| || || ||| | || || | Sbjct 28 TTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGG 87 Query 179716 AGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTG 179775 | |||||||| || || || ||||| ||||| || || || || || || ||| | |||| Sbjct 88 AAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTG 147 Query 179776 CTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 179830 | ||||||||| | ||||| || |||||||| || |||| ||||| || || Sbjct 148 CGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 202 >seq79754 Length=5746 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 ||||||| ||| || || | || || |||| || || || ||||| ||||| |||| Sbjct 4794 CAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTG 4853 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | |||||||| ||||| || ||||||| | | || || |||||| ||||| |||||| Sbjct 4854 CTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACATT 4913 Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGA 179637 |||||||| | ||||| | |||| ||| | |||| Sbjct 4914 TCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq761979 Length=10221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 177766 TATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCAC 177825 |||| ||||| || || ||||||||| || ||||| |||| | | || | ||| Sbjct 436 TATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCAC 377 Query 177826 TTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTC 177885 || || || || || ||| || || | ||||||||| | |||||||||||||||| Sbjct 376 TTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 317 Query 177886 CAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAA 177945 | || || | || |||||| | | ||| | | || |||||| |||||| |||| Sbjct 316 GAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAA 257 Query 177946 CTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATA 177989 ||| || ||| || ||||||| ||| || || ||| ||||| Sbjct 256 CTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 >seq36335 Length=20465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 178024 CTTG-TTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGG 178082 |||| |||| ||| | |||||||| || ||||| | ||||| | || ||| || Sbjct 3528 CTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGG 3469 Query 178083 CACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCA 178142 || ||||||| ||| |||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 3468 TACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCA 3409 Query 178143 CATGTTGGGCGT 178154 |||||| || || Sbjct 3408 CATGTTAGGTGT 3397 >seq788035 Length=1366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 178254 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTT 178313 ||||||||| || |||||||| ||||| || || ||||| || |||||| ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 178314 CGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCT 178373 || | | ||||||||||| || || |||||||| ||||| | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 178374 CGCAGC 178379 || || Sbjct 1077 GGCTGC 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582752988267200