Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq795821 201 1e-46 seq702427 190 2e-43 seq744730 172 6e-38 seq152940 163 3e-35 seq1742979 156 4e-33 seq17334 156 4e-33 seq1814684 140 3e-28 seq594144 140 3e-28 seq1814503 125 7e-24 seq1813704 116 4e-21 seq1741414 87.8 2e-12 >seq795821 Length=1075 Score = 201 bits (222), Expect = 1e-46 Identities = 207/270 (77%), Gaps = 18/270 (7%) Strand=Plus/Minus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 832 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACTTCTGCCTCACG 773 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA---------GGC 8461 ||| ||||| ||| |||| ||||||||||| |||||||||| |||| | | Sbjct 772 GGTCCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGACTACACCACACTGGGAC 713 Query 8462 AAAA------GCCACCACGCCAAGCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCA 8514 | | ||||||| ||| ||||||||||| | ||||||||||| || || |||||| Sbjct 712 TACACCAGCTGCCACCATGCCTAGCTAATTTTTTGGATTTTTAGTAGTGACAGCGTTTCA 653 Query 8515 CCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTC 8574 | | ||||||||| |||||| || ||| | |||| |||||||| | ||||| |||||| Sbjct 652 CTGTATTGGCCAGGATGGTCTTGATCTCTTCACCT--TGTGATCCCCTTGCCTTGGCCTC 595 Query 8575 CCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 | || |||||||||||||||| ||||||| Sbjct 594 CAAATTTGCTGGGATTACAGGCCTGAGCCA 565 >seq702427 Length=201 Score = 190 bits (210), Expect = 2e-43 Identities = 122/133 (92%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct 201 TTTTTGTATTTTTAGTAGAAACAGGGTTTCACCATGTTGGCCAGACTGGTCTCGAACTCC 142 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 |||||||| |||||| ||||||| ||||| |||||||||||||||||||||| |||||| Sbjct 141 TGACCTCAGGTGATCGGCCTGCCTTGGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCC 82 Query 8604 ACCGCGCCTGGCC 8616 || || ||||||| Sbjct 81 ACTGCTCCTGGCC 69 >seq744730 Length=273 Score = 172 bits (190), Expect = 6e-38 Identities = 136/162 (84%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| ||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 180 TCTCGCTCTGTAGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAAGCTCTA 121 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG--GC 8461 ||||||||||||| || |||||||||||||||||||| |||||| |||||||||| || Sbjct 120 CCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCAGGGATTACAGGTGC 61 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAG 8503 | |||||| ||| ||||| |||||||||||| | |||| Sbjct 60 GTGAACCACCATGCCCGGCTAAGTTTTGTATTTTTGGGAGAG 19 >seq152940 Length=220 Score = 163 bits (180), Expect = 3e-35 Identities = 167/219 (76%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| ||||||||| |||| ||||| |||| |||||||| |||||| | Sbjct 14 TCTCGCTCTGTCACCCAGGCTGCGGTGCGGTGGCGCTCTCTCGGCTCACTGAAACCTCTG 73 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 | |||||||||| || ||||| | ||| |||||||||||||||||| Sbjct 74 CTTCCCGGGTTCCAGTGATTCTTC-----------CCA-AGTAGCTGGGATTACAGGTGC 121 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||| ||| | ||| || || ||||||||||||||| ||||||| ||| ||||| Sbjct 122 GCACCATGACGGCCGGCTCATCGTTCTATTTTTAGTAGAGACGGGGTTTCTCCACGTTGG 181 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACC 8562 ||| |||||||||||||||||||||||| ||||||||| Sbjct 182 CCACGCTGGTCTCGAACTCCTGACCTCAAATGATCCACC 220 >seq1742979 Length=232 Score = 156 bits (172), Expect = 4e-33 Identities = 132/160 (83%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| ||| || |||| ||||||| |||| ||||| |||||| ||| | ||||| Sbjct 160 TCACTCTTGTTTCCACGGCTAGAGTGCAATGGCGCGATCTTGGCTCACCGCACCTTCCGC 101 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||||||||| ||| ||||||||||||||||||| || ||||||||| ||||||| Sbjct 100 CTCCCGGGTTCGAGCGCTTCTCCTGCCTCAGCCTCCCGATTAGCTGGGACTACAGGCGCC 41 Query 8465 AGCCACCACGCCAAGCTAAT-TTTTGTATTTTTAGTAGAG 8503 ||||||| || ||||||| |||||||||||||||| || Sbjct 40 CACCACCACACCCAGCTAATTTTTTGTATTTTTAGTACAG 1 >seq17334 Length=428 Score = 156 bits (172), Expect = 4e-33 Identities = 147/185 (79%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| |||||||||| |||||||||| ||||| | |||||||| |||||| Sbjct 244 TCTCACTCTGTCGCCCAGGCTGTAGTGCAGTGGTGCGATCTTGGGTCACTGCAGCCTCCG 303 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG--GC 8461 ||| || ||||||||| ||||| | || |||||||| ||||||||||| |||||| || Sbjct 304 CCTGCCAGGTTCAAGCAATTCTTCCACCCCAGCCTCCCGAGTAGCTGGGGTTACAGGTGC 363 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGT 8520 |||| |||| || ||| ||||||| |||||||| | ||||||||||| || Sbjct 364 CTGCCCCACGGCGCCTGACTCCATTTCGTATTTTCAGTAGAGACGGGGGTTTCACCACGT 423 Query 8521 TGGCC 8525 ||||| Sbjct 424 TGGCC 428 >seq1814684 Length=247 Score = 140 bits (154), Expect = 3e-28 Identities = 115/140 (82%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 8479 GCTAATTTTT--GTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTC 8536 |||||||||| ||||||||| |||||| |||||||||| |||| | ||||||| Sbjct 243 GCTAATTTTTTTGTATTTTTAATAGAGACGGGGTTTCACCGTGTTAGNNNNNNTGGTCTC 184 Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 || ||| ||||||| |||| || || |||||||||||||||||||||||||| |||||| Sbjct 183 GATCTCTTGACCTC--GTGACCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGC 126 Query 8597 ATGAGCCACCGCGCCTGGCC 8616 |||||||| | ||| |||| Sbjct 125 GTGAGCCACTGAGCCCGGCC 106 >seq594144 Length=210 Score = 140 bits (154), Expect = 3e-28 Identities = 89/97 (92%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 8520 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAA 8579 |||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| Sbjct 210 TTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCACCCTCCTCGGCCTCCCAAA 151 Query 8580 GTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||||||||||||||||||||| | ||| |||| Sbjct 150 GTGCTGGGATTACAGGCATGAGCCACTGTGCCCGGCC 114 >seq1814503 Length=234 Score = 125 bits (138), Expect = 7e-24 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 8410 GGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCA 8469 ||| ||||| || || ||||||||| ||| ||||||||||| |||||| | ||| Sbjct 107 GGGCTCAAGTAATCTTCTTGCCTCAGCTTCCCAAGTAGCTGGGACTACAGGTGCACACCA 166 Query 8470 CCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGC 8529 ||||||| ||||||||||||||||||||||||||| | |||| ||||||| ||| ||| Sbjct 167 CCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAACGTTTTGCCATGTTTGCCTGGC 226 Query 8530 TGGTCTC 8536 ||||||| Sbjct 227 TGGTCTC 233 >seq1813704 Length=223 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCAC 8470 ||||||||| |||||||||| ||||||||| |||||||||||||||||||| | | Sbjct 223 GGTTCAAGCGATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCACTAT 164 Query 8471 CACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 || || | |||||||||||||||||||| || |||||| ||||||||||| Sbjct 163 TACACCTGGATAATTTTTGTATTTTTAGTACGGATGGGGTTTTACCATGTTGGC 110 >seq1741414 Length=208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 ||||||||||||||||||||| |||| |||||| ||||| ||||||||| |||||| || Sbjct 143 TGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCATTGCAACCTCTGCCTCCTGG 202 Query 8412 GTTCAA 8417 |||||| Sbjct 203 GTTCAA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509634447388000