Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq50588 80.6 5e-11 >seq50588 Length=314 Score = 80.6 bits (88), Expect = 5e-11 Identities = 119/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 506 AACAGGTTTTTAAAATTGCCGAGCCCTTTCGAGTTGCGCATCGCCTCGCGCAGCGATTCG 565 |||||||| |||||||| |||| ||||| |||| ||| || |||| | || Sbjct 309 AACAGGTTGCGGAAATTGCCCGGCCCACGCGAGTCCCGCAGCGCTTCACGCAAGGCGTCC 250 Query 566 ACGTCGGTCGCGCTCTG-CGCCGGGTCGGTCACATACATGATGTAACCCGCATGCGCGCC 624 ||||| | || ||| | | ||| ||||||| || | ||| | || ||||||| ||| Sbjct 249 ACGTCCAT-GCCCTCCGGCTGCGGATCGGTCATGTAGAGGATAAACCCGGCATGCGAGCC 191 Query 625 GTTCTGGTAATACTTGCGGCGGAACAGCGTTGCGGATTCATTCAGC 670 ||| ||| ||| |||||||||||| ||| || ||||| || ||| Sbjct 190 GTTGGTGTAGTACCTGCGGCGGAACAACGTGGCCGATTCGTTGAGC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95460122160532