Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_001396.1 Length=7308 Score E Sequences producing significant alignments: (Bits) Value seq53256 118 5e-23 >seq53256 Length=239 Score = 118 bits (130), Expect = 5e-23 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 3758 GGCCGGATTGCGTTTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGA 3817 || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| || Sbjct 209 GGGCGGGTGGCCTTCCCGCTGTTCGCGCTGGTCATGGCGTACAACCTCGCCCAGCCCGGC 150 Query 3818 GCTGATGTAGGCAAGTCGGTCCGCCGGCTGGTGTGCTGGGGGCTGTTGGCGCAACCGTTC 3877 || || || | |||||| || ||| |||| | | ||||| | ||||| || | Sbjct 149 GCCGACGTGGTCAAGTCCGTTCGCAGGCTCGCGCTGTGGGGCGCCATCGCGCAGCCTGTG 90 Query 3878 CACGCCTGGGCGTTTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCTGGCT 3937 || ||| | |||| ||||||||| |||| ||||| |||| ||| | ||||||||| Sbjct 89 CATGCCCTGACGTTCGGCTACTGGTTGCCGCTGAACATCCTGCTGACCTTCGCCCTGTGC 30 Query 3938 GCTGCCGCTGTCT 3950 ||||| || |||| Sbjct 29 GCTGCTGCGGTCT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22726422141408