Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq980070 140 4e-28 seq52972 89.7 6e-13 >seq980070 Length=1613 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||||||||| || || ||||| | | ||||| | ||||| ||||||||||| ||| Sbjct 397 GATGAAGTCGCCCACTTCCAGGCCGGCCTGCTGGGCCATCATGTGGGTCAGCAGGGCGTA 456 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 | || || ||||||||||| || || ||||| | ||||||||| |||||||| Sbjct 457 GGAAGCGATATTGAAGGGCACGCCGAGGAAGATGTCGGCGCTGCGCTGGTAGAGCTGGCA 516 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||| |||| ||| | ||||||||||||||| | | | ||||||||||||||| ||| Sbjct 517 GGACAGCTTGCCGTCGGCCACGTAGAACTGGAAGAAGGCGTGGCAGGGCGGCAGCTTCAT 576 Query 145911 GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 |||| ||| ||| ||||||||||| || || Sbjct 577 CTGCGGCACGTCGGCCACGTTCCAGGCGGAGACGA 611 >seq52972 Length=254 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || ||||||| || || | ||||||||| || ||||| |||| || || Sbjct 2 TGCGCAACCATGTGCACGAGAAGCGCGTAGCTGGCAATCTTGAACCGCACGCCGAGGAAG 61 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 || | | ||||||||| |||||||| || |||| ||| | ||||| ||||||||| Sbjct 62 ATATGGGCGCTGCGCTGGTAGAGCTGGCACGACAGCTTGCCGTCGGCCACATAGAACTGG 121 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATG-GCGGGCAGGTCCGCCGGGTTCCAGGCGGT 145940 | | |||||||||||||| |||| ||||| | ||| ||| |||||||| | Sbjct 122 AAGAACGCATGGCAGGGCGGCAGCTTCATGCGCGGG-ATGTCGGCCACATTCCAGGCAGA 180 Query 145941 GAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTG 146000 | || |||| | |||||||| | |||||||| | ||||| || || ||| Sbjct 181 CACGATCAGCCGGCGCGAATCGGGGTTGCGCTTGATCTGGGCAATCAGCTCGGCGATCTG 240 Query 146001 GTC 146003 ||| Sbjct 241 GTC 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574750285340040