Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq5904 116 7e-22 seq6105 95.1 2e-15 >seq5904 Length=257 Score = 116 bits (128), Expect = 7e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 354 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 413 ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 79 ATTGGTGGGCCGTGAAGGATTCGAACCTTCGACCAAAAGATTAAAAGTCTTCTGCTCTAC 138 Query 414 CGACTGAGCTAACGACCCA 432 |||||||||||||| |||| Sbjct 139 CGACTGAGCTAACGGCCCA 157 >seq6105 Length=249 Score = 95.1 bits (104), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 |||||||||| || ||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 208 TTGGTGGGTCCTGCGGGATTCGAACCCGCGACCAATAGATTAAAAGTCTACTGCTCTACC 149 Query 415 GACTGAGCTAACGACCC 431 ||||||||||| ||||| Sbjct 148 GACTGAGCTAAAGACCC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100862641988554