Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq95629 95.1 2e-14 >seq95629 Length=7091 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || ||||| ||||| |||| ||| Sbjct 3540 ATGCAGATTTTTGTGAAGACTCTCACTGGGAAGACCATAACCCTAGAGGTTGAGAGCCC- 3482 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || | ||||||||| || ||||| || |||| || Sbjct 3481 -GACACCATTGATAATGTGAAGGCCAAGAATCAAGATAAGGAGGGTATCCCGGCTGACCA 3423 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||| || ||||| ||||| || | ||||| | || | || | |||||||| Sbjct 3422 GCAGATGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGGCGTTCTTTGGCTGATTATAA 3363 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| | || ||||| | ||| | || ||||| || Sbjct 3362 TATACAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGTGGCAT 3312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735833965276800