Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1980960 91.5 3e-13 >seq1980960 Length=13069 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||||||||| || || ||||| |||| || ||||| || ||| | Sbjct 1363 AGACTTTGACTATGATTTCTTTGGGTTTAAGACGCTTGAGAGGTCCTATCTACTGAAAGT 1422 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| || | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 1423 TGGTGGGAAAGTTGTGGAAAGACCGCAACATATGTTAATGAGGGTTTCTGTTGGGATACA 1482 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 1483 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 1542 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 1543 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 1575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045179402709568