Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq53833 176 1e-39 seq50522 127 5e-25 seq50588 116 8e-22 >seq53833 Length=229 Score = 176 bits (194), Expect = 1e-39 Identities = 173/221 (78%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 29566 GCTGTGGACCTGCTTCGGCGCCAAGGGCCTGGTGGCGCTGGCATTCTGGTTCGGCTCGCT 29625 ||||||| |||||||||||| |||| | || || ||| ||||||||||| || || Sbjct 220 GCTGTGGCAATGCTTCGGCGCCCAGGGTGTCGTTGCCCTGATCTTCTGGTTCGGTTCACT 161 Query 29626 GTTCGCGGAGCAGATCCGC-GCCGAGTTCCAGTCCTTTCCGTTCCTCGAGGCCACCGGCG 29684 |||||| |||||||||||| | || | ||| || ||||||||||| ||||||||||||| Sbjct 160 GTTCGCCGAGCAGATCCGCAGTCGC-TACCAATCGTTTCCGTTCCTGGAGGCCACCGGCG 102 Query 29685 AGGCCGGTGCCGGCAAATCCACGCTGATCACCTTCCTGTGGAAGCTGCTCGGCCGGGCGG 29744 ||||||| |||||||| |||| || ||| | | | ||||| |||||||||||||| | Sbjct 101 AGGCCGGCGCCGGCAAGACCACCGTGCTCAACCTGTTATGGAAACTGCTCGGCCGGGCCG 42 Query 29745 ACGAGGAAGGCCAGGACCCGTCGAAGATGACCAAGGCGGGC 29785 | |||||| || ||||| ||| ||||||||| ||| Sbjct 41 GTTACGAAGGCTTCGATCCGTCCAAGTCGACCAAGGCCGGC 1 >seq50522 Length=209 Score = 127 bits (140), Expect = 5e-25 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 1535 GCGTCGCTAATGGATCCGAACCCACCAGCGTTCTGCGGCACCACCCCCATCAGCTGCGGA 1594 || || | ||| || ||||| ||||| || ||||||||||| | |||| ||||||||| Sbjct 208 GCATCCCGAATCGAGCCGAAGCCACCGGCATTCTGCGGCACGATGCCCAGCAGCTGCGGG 149 Query 1595 TAGACCCGCAGGCCGGCGAGCTGGTCGTCGCGGCTGATGTTCTTGATTGAGCCGAACTCG 1654 | ||||| |||| || ||| || || | | |||||| | |||||| Sbjct 148 GGTATGCGCAGCGCGGCCAGAATGTCATCACGAGTCACACGCTTGATGCCGGTGAACTCA 89 Query 1655 TCCTTGGCCGCCACCTCGCTGACCGGAATCAGTTGGATCCCCTCCTTCTTCCCGTTCGGC 1714 |||||||||||||| ||||||| ||| ||||| || | || |||||||| || || ||| Sbjct 88 TCCTTGGCCGCCACTTCGCTGATCGGGATCAGCTGCAATCCATCCTTCTTGCCATTGGGC 29 Query 1715 GCGTAGACGAACAGGTTGCGGAAATTGC 1742 | | | |||||||||||||||||||| Sbjct 28 GAATGCATGAACAGGTTGCGGAAATTGC 1 >seq50588 Length=314 Score = 116 bits (128), Expect = 8e-22 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 1723 GAACAGGTTGCGGAAATTGCCAGGCCCCTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTC 1782 ||||||||||||||||||||| ||||| || | | |||||| |||| ||||| Sbjct 310 GAACAGGTTGCGGAAATTGCCCGGCCCACGCGAGTCCCGCAGCGCTTCACGCAAGGCGTC 251 Query 1783 GATGTCTTCCTCATTCTG-TGCGGCGTCGGTCATGTAGAGGATGAAGCCGGCGTGGCTGC 1841 | ||| | | | | ||||| ||||||||||||||||| || ||||| || || Sbjct 250 CACGTCCATGCCCTCCGGCTGCGGA-TCGGTCATGTAGAGGATAAACCCGGCATGCGAGC 192 Query 1842 CGTTGTTGTAGTACTTACGCCGGAACAGCGTGGCCGACTCGTTCAGCAGGGCGCTCTGTA 1901 ||||| |||||||| | || ||||||| ||||||||| ||||| ||||| || ||| | Sbjct 191 CGTTGGTGTAGTACCTGCGGCGGAACAACGTGGCCGATTCGTTGAGCAGCGCCGACTGCA 132 Query 1902 GGGCGCAGAACCACTCCGGCA 1922 || | ||||||||||| Sbjct 131 CAACGGCCAGCCACTCCGGCA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110927995221004