Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq30277 311 3e-80 seq1870055 237 5e-58 seq216162 199 1e-46 seq54427 159 1e-34 seq50314 145 3e-30 seq979876 134 5e-27 seq20158 123 8e-24 seq2072468 107 6e-19 seq4607 93.3 1e-14 seq54357 89.7 2e-13 seq833845 80.6 9e-11 >seq30277 Length=461 Score = 311 bits (344), Expect = 3e-80 Identities = 350/465 (75%), Gaps = 10/465 (2%) Strand=Plus/Minus Query 33902 GACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACC 33961 ||| ||||||| || | ||||| | |||| | |||| || || || ||| || Sbjct 460 GACCCGGTCCAATGGTCATGGCGCCGAAGCATCCGGCGTCGTGGTCCGCACCACCTTGCC 401 Query 33962 GCGAACTGCGCCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCAC 34021 ||| |||| ||||| ||||| ||||| |||| ||| |||| ||||| || || || Sbjct 400 ACGACGCACGCCCCGCAACCCCTGACGCTTCGTCAAGCGTTCGACTGTGCAACGCGCGAC 341 Query 34022 CGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTT--CGGCACGCCGTAGACCTGCATG 34079 ||||| || || |||||| ||||||||||||| |||| ||| || |||||| | Sbjct 340 ACGGATGCCCTCGCGATTCATCGGCTTCCAGACCTTGTCGGC--GCCATACACCTGCCAG 283 Query 34080 TTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGC---TCATCGCGTTTCGCGCGG 34136 ||||| |||||||| |||| ||| || || | |||| || ||||||| || || Sbjct 282 TTGGCATGCCAGACGCGCTCGATGTCGGGG---ATAAGCGCGTCGTCGCGTTGGGCACGT 226 Query 34137 GCGCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCA 34196 |||||| || ||| | ||| | || || || ||||| ||||||| ||||||||| Sbjct 225 TTGCAGCGCAGCGCCGGTTTGCGTTGCTGGGCCGCGTGGCGCCGGTAGCAAGACGGGGCA 166 Query 34197 ATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAG 34256 ||| |||||||||||||||| |||||||||||| | | ||||| | | || ||| | Sbjct 165 ATCTGCAAGACCTTGCAGATGGGCTCGACCCCGTACGCATCGCGGTAGCGGTCGATGTAC 106 Query 34257 GCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTT 34316 ||||||| ||||||| |||||||||||||||||||| || ||||||||||| ||| | Sbjct 105 GCCTTCACGACTTGAGTCGGCGGTCGAGCTCCGCCTGCGCAAAAAACGCGCTGGCCGTCT 46 Query 34317 TGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCA 34361 ||||||||||||||| |||| |||||||||||||||||||| || Sbjct 45 TGAGAATCTCGTTGGCGCGGCTCAGTTCCTTGACCTCGCGCTGCA 1 >seq1870055 Length=261 Score = 237 bits (262), Expect = 5e-58 Identities = 205/254 (81%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 34313 AGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATG 34372 || || || || ||||||| ||| ||||| |||||| ||| ||||||| ||||||||| Sbjct 1 AGCTTCAGGATTTCGTTGGCCCGCCGCAGCTCCTTGTTCTCACGCTCCAGGGCTTTGATT 60 Query 34373 CGTTCACGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTTA 34432 || || |||||| | || ||||||| ||||||| || |||| |||| || |||||| Sbjct 61 CGCTCGCGCTCGTCTGTCGTCACGCCTGCGCGCTCACCTTGGTCAACCTGGTCGCGCTTG 120 Query 34433 ACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCC 34492 ||||| || |||||| |||||||||||||||||||||| ||||| || ||||| ||| Sbjct 121 ACCCACTCATGCAGCGTTTGCGGCGTGCAGCCGATCATCGCTGCAATTGACTCGACTGCC 180 Query 34493 GCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGG 34552 ||||| | |||||| |||||| |||||||||| |||||||| || ||||| || || || Sbjct 181 GCCCAGAGCGACGGATGCTCGTTACGCTGCTCACGTACCAGACGGACTGCACGTTCCAGG 240 Query 34553 ACTTCCGGGGAAAA 34566 |||||||| ||||| Sbjct 241 ACTTCCGGCGAAAA 254 >seq216162 Length=801 Score = 199 bits (220), Expect = 1e-46 Identities = 185/230 (80%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 34415 TCGACCTCGTTGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGC 34474 |||||||| | |||||| ||||| |||| ||||||||||||| |||||| ||| | ||| Sbjct 17 TCGACCTCCTCGCGCTTGACCCAGTCCAGCAGCGTCTGCGGCACGCAGCCAATCTTGGGC 76 Query 34475 GCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGG 34534 || || ||||| || |||||||||| |||||| | ||||| || ||||| | |||| | Sbjct 77 GCGATGGATTCAACCGCCGCCCACAACGACGGATACTCGCATCGGTGCTCTTGCACCATG 136 Query 34535 CGCACTGCGCGCTCTCGGACTTCCGGGGAAAACTGCTTGGCTTCTGTTCATGGCTCCATT 34594 ||||| |||||||| || || || || || |||| || | | ||||||| |||||||| Sbjct 137 CGCACGGCGCGCTCGCGCACCTCGGGTGAGAACTTGTTCG-TCTTGTTCATTGCTCCATT 195 Query 34595 CTCTC-AGAGTTGGAGCCTCCACAAA-CTCGGGGCGGTTCAG--ACAGCA 34640 ||||| ||||||||||||||| |||| | ||||||| ||||| |||||| Sbjct 196 CTCTCAAGAGTTGGAGCCTCCTCAAATCCCGGGGCGATTCAGCAACAGCA 245 >seq54427 Length=271 Score = 159 bits (176), Expect = 1e-34 Identities = 196/267 (73%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 33485 CAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTA 33544 || |||||||| ||| | ||| |||| || ||||| || || |||||||| | |||||| Sbjct 271 CAATTCGACGGCTTCACGCGTCCTCCAGGGAGCGCGGCGGTGGATCAGTTCAGCCTTGTA 212 Query 33545 CAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGA 33604 || ||||||||||| || |||| ||||| ||||||||||||||| ||| || || || Sbjct 211 GAGCCCGTTGATCGTCTCAGCCAAGGCATTATCGTAGCTGTCGCCCTTGCTACCCACAGA 152 Query 33605 GGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCC 33664 || ||||||||||| || ||||| || ||||| || || |||||||| | || Sbjct 151 CGGTTCGATGCCGGCTTCTGCCAGGCGCTCGCTATACTTTATCGATACGTATTGCGGGCC 92 Query 33665 CCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTG 33724 | |||| |||||| | | | ||| | | || || || ||||||||||| || Sbjct 91 GCGGTCGCTATGATGGACGA---GCTCGTTCCGTTCAGGCTGACGAGCGTACAGCGCCTG 35 Query 33725 TTCAAGTGCATCCAGAACAAAGTCCGT 33751 || |||||||| || || ||||| || Sbjct 34 CTCCAGTGCATCGAGCACGAAGTCGGT 8 >seq50314 Length=262 Score = 145 bits (160), Expect = 3e-30 Identities = 189/259 (73%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 5763 TATCCGGAACTCGCCAACGGCATGCTGAAGGGCTACCCGGTGGGAAAAACGACGCAAGTA 5822 ||||||||| ||| | ||| || | ||||||||||| || || | | || | Sbjct 258 TATCCGGAAATCGAGCAAGGCCTGTTCAAGGGCTACCCAGTTGGCTTGAGCAACCAGATC 199 Query 5823 CCGATCAATCTCGGCGAAACCGGCAAGGAGTCGGAGATCTACTTCACCGACTTCGGCGAC 5882 ||| |||| || |||| ||| | ||| | || | |||||| | |||||| ||| Sbjct 198 CCGGTCAACCTGGGCGCCGGTGGCGATGAGACCGAATTTTACTTCGTCAACTTCGCAGAC 139 Query 5883 GTTTTCATCGGCGAGGA-AGAAACGCTGGAGATCGACTACAGCAAGGAAGCCACCTACAA 5941 | | |||||||| || | || ||| |||| || ||| || |||||| ||||||| Sbjct 138 ATGATGATCGGCGAAGACATGGAC-CTGACGATCTCCTTCAGTAACGAAGCCTCCTACAA 80 Query 5942 GGACGCCGACGGCCACATGGTCAGTGCATTCCAGCGCGACCAGACGCTGATTCGCGTGAT 6001 ||||||||| ||| ||||||||||||| |||||||| |||||||||||| | ||||| Sbjct 79 GGACGCCGAAGGCAACATGGTCAGTGCGTTCCAGCGTGACCAGACGCTGGTCAAAGTGAT 20 Query 6002 CGCAAAGAACGACTTCGGC 6020 ||| ||| ||||||||||| Sbjct 19 CGCCAAGCACGACTTCGGC 1 >seq979876 Length=1411 Score = 134 bits (148), Expect = 5e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33764 GCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAG 33823 ||| ||||||||||| ||||| || || |||||||||||||| ||||| ||||||||||| Sbjct 1263 GCTCACCCGCCAGCCCACAATGCGCCGCGCGAACACGTCGATGACGAACGCCACGTACAG 1322 Query 33824 CCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTC 33883 |||||| ||||| || |||||| || || || |||||||| | ||||| || || || Sbjct 1323 CCAGCCCTGCCAAGTGCTGACATAAGTGAAGTCGGACACCCACTGTTGATTGGGCCGCTC 1382 Query 33884 AGCCTTGAACTGCCGGTTGACTCGGTCCA 33912 || |||||| || | ||| ||||||| Sbjct 1383 GGCTTTGAACACTCGCTGGACCCGGTCCA 1411 >seq20158 Length=683 Score = 123 bits (136), Expect = 8e-24 Identities = 209/301 (69%), Gaps = 14/301 (5%) Strand=Plus/Plus Query 33315 CTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCG 33374 ||||| ||| |||||| || ||||||| ||||| | ||| |||||| || Sbjct 395 CTGAATCGCCCCGGGATTCCCGGAGGCTCGTTGGCGTGAGT---------CACGTCTCCG 445 Query 33375 GCATTT-CTGA-GTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGA 33432 | | ||| | ||| |||||||| || || ||||| ||||| |||| ||||||| Sbjct 446 TGACGTGCTGTCGCTGTTGATAGTAGTTCGCTTCGGCTTCGGCGGGTAGGATGTAGCCGA 505 Query 33433 GCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGA 33492 || | | | || || | ||||||||||| | ||||| |||||| |||||||| | Sbjct 506 TCGATCCGAGTAGTCGCCGGTGGTTGTACCAATCCACCCAGCGCAGCGTGGCCAGTTCCA 565 Query 33493 CGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGT 33552 ||| | | ||| || || ||||| | | || | ||| |||| || | Sbjct 566 GCTCTTCGCGACTGCGCCA---GGAACGACGATGCACGACCTCGGCCTTTTACAACCCAT 622 Query 33553 TGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGA 33612 ||||||||||||||||||| |||||||||||||| || ||| ||||| || ||||||| Sbjct 623 TGATCGTTTCGGCCAGCGCGTTGTCGTAGCTGTCTCCGACGCTTCCGACAGACGGCTCGA 682 Query 33613 T 33613 | Sbjct 683 T 683 >seq2072468 Length=291 Score = 107 bits (118), Expect = 6e-19 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 17616 CGACGGCGGGTCGTATACGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCT 17675 ||| || || | ||| |||||||| || | || ||||||||||||| || ||| Sbjct 287 CGATGGAGGCGCCTATCAGCAGGTGCCGGTGGACGCAGTCGACGGCAAGACCACCACGCG 228 Query 17676 CTACGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCGAAAAACGGCTGGCTGATCCGTGT 17735 |||||||||||||| ||| ||||| ||||| ||| | | ||||||| ||| || || Sbjct 227 CTACGAGCGCTCGCTTCGCATCGATTTGCCGGACGCCACCACTGGCTGGCAGATACGCGT 168 Query 17736 GCGCCGTATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAAGC 17795 |||||| | ||||||||| | |||| | |||||||||| | || | | | Sbjct 167 GCGCCGCCTGACGCCGAACCAGAACACCAACAAGATCGCCGACACCATGCTGGTGGCCGG 108 Query 17796 GATCACCGAAATCATCGATCGGAAGCTTCGCTATCCGATGACGGCGCTCGTCGGCATGAC 17855 ||| || ||||||| ||||| |||||||||| || ||||| || ||| Sbjct 107 TTGCACAGAGGTCATCGACGCCAAGCTGCGCTATCCGAATACTGCGCTGCTCTACATCGA 48 Query 17856 GTTCGACGC 17864 |||||||| Sbjct 47 ATTCGACGC 39 >seq4607 Length=217 Score = 93.3 bits (102), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 14/222 (6%) Strand=Plus/Minus Query 33603 GAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGAC 33662 || |||||||||||||| || ||||| || ||| |||||||||| || ||||| || Sbjct 217 GACGGCTCGATGCCGGCTTCGGCCAGGCGCTCGGTGTAGCGAATCGACACATATTGCGAT 158 Query 33663 CCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCT 33722 || | |||| ||||| | || | | |||||||| | || |||| ||||| Sbjct 157 CCGCGGTCGCTGTGATGCACCAGCG------CGTCGCCCGGACGCCGCGCGTGAAGCGCC 104 Query 33723 TGTTCAAGTGCATCCAGAACAAA----GTCCGTGGTCATCGACGAGCTGACCCGCCAGCC 33778 ||||| || ||||| || || || ||| || | | ||||||| | | |||||| Sbjct 103 TGTTCGAGCGCATCGAGCACGAATTGGGTCTGTTGGC-TCGACGA---CAGCTTCCAGCC 48 Query 33779 AACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTA 33820 || || || || ||| | |||||||| | ||| || ||||| Sbjct 47 GACGATTCGCCGTGCGTAGACGTCGATGATGAAGGCGACGTA 6 >seq54357 Length=392 Score = 89.7 bits (98), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 4032 GCGGTCGCAGATCCGGCGGTCGAACATATCGTGCTCGACATCGACAGCAACGGCGGGAGC 4091 ||||| || |||||| ||| |||| |||||||| |||||||||||| || ||| Sbjct 149 GCGGTAGCCGATCCGATGGTTGAACGCATCGTGCTGGACATCGACAGCCCTGGTGGGTCT 90 Query 4092 GCGACCGGCGCGTTCGAGCTGGCGGACGACATCCGCGC--TGCCTCGTTGGTGAAGCCGA 4149 || |||||| ||||| ||||| | ||| || ||||| || ||| | |||||| | Sbjct 89 GCTGTCGGCGCTTTCGAACTGGCCGCCGATATTCGCGCCATGGCTC--AGCAGAAGCCCA 32 Query 4150 TCACCGCAATCGTCAACTTCTCGGCTT 4176 |||||| ||||| |||||| ||||| Sbjct 31 TCACCGGCATCGTTAACTTCATGGCTT 5 >seq833845 Length=260 Score = 80.6 bits (88), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 22918 ATGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTG-ACCACATCAT 22976 ||| | || ||||| ||| ||||| ||||||||||| || || ||| | ||| || Sbjct 174 ATGCCCAAGCCCATCATTTCCTGGCCGGGCGGCAAGCGCCGCCT-ACTGAAGCACCTCTA 116 Query 22977 CCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTA 23036 |||| ||| || | || ||||| |||||||||| ||||| ||||| || ||| | Sbjct 115 TCCGCACTTCCCAACCCATGACTGCTACGTCGAGGCATTCGCCGGCGGCGCCGCGTCGCT 56 Query 23037 CTTCATGCGACCG---CCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGA 23087 | ||||| ||| || ||| | | || || ||||||| ||||||||||| Sbjct 55 GCTGATGCGGCCGTATCCGGCCCAGATGGAAGTCCTCAACGACATCAACGGCGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166460655706270