Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_003309.1
Length=53373
Score E
Sequences producing significant alignments: (Bits) Value
seq30277 311 3e-80
seq1870055 237 5e-58
seq216162 199 1e-46
seq54427 159 1e-34
seq50314 145 3e-30
seq979876 134 5e-27
seq20158 123 8e-24
seq2072468 107 6e-19
seq4607 93.3 1e-14
seq54357 89.7 2e-13
seq833845 80.6 9e-11
>seq30277
Length=461
Score = 311 bits (344), Expect = 3e-80
Identities = 350/465 (75%), Gaps = 10/465 (2%)
Strand=Plus/Minus
Query 33902 GACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACC 33961
||| ||||||| || | ||||| | |||| | |||| || || || ||| ||
Sbjct 460 GACCCGGTCCAATGGTCATGGCGCCGAAGCATCCGGCGTCGTGGTCCGCACCACCTTGCC 401
Query 33962 GCGAACTGCGCCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCAC 34021
||| |||| ||||| ||||| ||||| |||| ||| |||| ||||| || || ||
Sbjct 400 ACGACGCACGCCCCGCAACCCCTGACGCTTCGTCAAGCGTTCGACTGTGCAACGCGCGAC 341
Query 34022 CGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTT--CGGCACGCCGTAGACCTGCATG 34079
||||| || || |||||| ||||||||||||| |||| ||| || |||||| |
Sbjct 340 ACGGATGCCCTCGCGATTCATCGGCTTCCAGACCTTGTCGGC--GCCATACACCTGCCAG 283
Query 34080 TTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGC---TCATCGCGTTTCGCGCGG 34136
||||| |||||||| |||| ||| || || | |||| || ||||||| || ||
Sbjct 282 TTGGCATGCCAGACGCGCTCGATGTCGGGG---ATAAGCGCGTCGTCGCGTTGGGCACGT 226
Query 34137 GCGCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCA 34196
|||||| || ||| | ||| | || || || ||||| ||||||| |||||||||
Sbjct 225 TTGCAGCGCAGCGCCGGTTTGCGTTGCTGGGCCGCGTGGCGCCGGTAGCAAGACGGGGCA 166
Query 34197 ATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAG 34256
||| |||||||||||||||| |||||||||||| | | ||||| | | || ||| |
Sbjct 165 ATCTGCAAGACCTTGCAGATGGGCTCGACCCCGTACGCATCGCGGTAGCGGTCGATGTAC 106
Query 34257 GCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTT 34316
||||||| ||||||| |||||||||||||||||||| || ||||||||||| ||| |
Sbjct 105 GCCTTCACGACTTGAGTCGGCGGTCGAGCTCCGCCTGCGCAAAAAACGCGCTGGCCGTCT 46
Query 34317 TGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCA 34361
||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 45 TGAGAATCTCGTTGGCGCGGCTCAGTTCCTTGACCTCGCGCTGCA 1
>seq1870055
Length=261
Score = 237 bits (262), Expect = 5e-58
Identities = 205/254 (81%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 34313 AGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATG 34372
|| || || || ||||||| ||| ||||| |||||| ||| ||||||| |||||||||
Sbjct 1 AGCTTCAGGATTTCGTTGGCCCGCCGCAGCTCCTTGTTCTCACGCTCCAGGGCTTTGATT 60
Query 34373 CGTTCACGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTTA 34432
|| || |||||| | || ||||||| ||||||| || |||| |||| || ||||||
Sbjct 61 CGCTCGCGCTCGTCTGTCGTCACGCCTGCGCGCTCACCTTGGTCAACCTGGTCGCGCTTG 120
Query 34433 ACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCC 34492
||||| || |||||| |||||||||||||||||||||| ||||| || ||||| |||
Sbjct 121 ACCCACTCATGCAGCGTTTGCGGCGTGCAGCCGATCATCGCTGCAATTGACTCGACTGCC 180
Query 34493 GCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGG 34552
||||| | |||||| |||||| |||||||||| |||||||| || ||||| || || ||
Sbjct 181 GCCCAGAGCGACGGATGCTCGTTACGCTGCTCACGTACCAGACGGACTGCACGTTCCAGG 240
Query 34553 ACTTCCGGGGAAAA 34566
|||||||| |||||
Sbjct 241 ACTTCCGGCGAAAA 254
>seq216162
Length=801
Score = 199 bits (220), Expect = 1e-46
Identities = 185/230 (80%), Gaps = 5/230 (2%)
Strand=Plus/Plus
Query 34415 TCGACCTCGTTGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGC 34474
|||||||| | |||||| ||||| |||| ||||||||||||| |||||| ||| | |||
Sbjct 17 TCGACCTCCTCGCGCTTGACCCAGTCCAGCAGCGTCTGCGGCACGCAGCCAATCTTGGGC 76
Query 34475 GCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGG 34534
|| || ||||| || |||||||||| |||||| | ||||| || ||||| | |||| |
Sbjct 77 GCGATGGATTCAACCGCCGCCCACAACGACGGATACTCGCATCGGTGCTCTTGCACCATG 136
Query 34535 CGCACTGCGCGCTCTCGGACTTCCGGGGAAAACTGCTTGGCTTCTGTTCATGGCTCCATT 34594
||||| |||||||| || || || || || |||| || | | ||||||| ||||||||
Sbjct 137 CGCACGGCGCGCTCGCGCACCTCGGGTGAGAACTTGTTCG-TCTTGTTCATTGCTCCATT 195
Query 34595 CTCTC-AGAGTTGGAGCCTCCACAAA-CTCGGGGCGGTTCAG--ACAGCA 34640
||||| ||||||||||||||| |||| | ||||||| ||||| ||||||
Sbjct 196 CTCTCAAGAGTTGGAGCCTCCTCAAATCCCGGGGCGATTCAGCAACAGCA 245
>seq54427
Length=271
Score = 159 bits (176), Expect = 1e-34
Identities = 196/267 (73%), Gaps = 3/267 (1%)
Strand=Plus/Minus
Query 33485 CAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTA 33544
|| |||||||| ||| | ||| |||| || ||||| || || |||||||| | ||||||
Sbjct 271 CAATTCGACGGCTTCACGCGTCCTCCAGGGAGCGCGGCGGTGGATCAGTTCAGCCTTGTA 212
Query 33545 CAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGA 33604
|| ||||||||||| || |||| ||||| ||||||||||||||| ||| || || ||
Sbjct 211 GAGCCCGTTGATCGTCTCAGCCAAGGCATTATCGTAGCTGTCGCCCTTGCTACCCACAGA 152
Query 33605 GGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCC 33664
|| ||||||||||| || ||||| || ||||| || || |||||||| | ||
Sbjct 151 CGGTTCGATGCCGGCTTCTGCCAGGCGCTCGCTATACTTTATCGATACGTATTGCGGGCC 92
Query 33665 CCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTG 33724
| |||| |||||| | | | ||| | | || || || ||||||||||| ||
Sbjct 91 GCGGTCGCTATGATGGACGA---GCTCGTTCCGTTCAGGCTGACGAGCGTACAGCGCCTG 35
Query 33725 TTCAAGTGCATCCAGAACAAAGTCCGT 33751
|| |||||||| || || ||||| ||
Sbjct 34 CTCCAGTGCATCGAGCACGAAGTCGGT 8
>seq50314
Length=262
Score = 145 bits (160), Expect = 3e-30
Identities = 189/259 (73%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 5763 TATCCGGAACTCGCCAACGGCATGCTGAAGGGCTACCCGGTGGGAAAAACGACGCAAGTA 5822
||||||||| ||| | ||| || | ||||||||||| || || | | || |
Sbjct 258 TATCCGGAAATCGAGCAAGGCCTGTTCAAGGGCTACCCAGTTGGCTTGAGCAACCAGATC 199
Query 5823 CCGATCAATCTCGGCGAAACCGGCAAGGAGTCGGAGATCTACTTCACCGACTTCGGCGAC 5882
||| |||| || |||| ||| | ||| | || | |||||| | |||||| |||
Sbjct 198 CCGGTCAACCTGGGCGCCGGTGGCGATGAGACCGAATTTTACTTCGTCAACTTCGCAGAC 139
Query 5883 GTTTTCATCGGCGAGGA-AGAAACGCTGGAGATCGACTACAGCAAGGAAGCCACCTACAA 5941
| | |||||||| || | || ||| |||| || ||| || |||||| |||||||
Sbjct 138 ATGATGATCGGCGAAGACATGGAC-CTGACGATCTCCTTCAGTAACGAAGCCTCCTACAA 80
Query 5942 GGACGCCGACGGCCACATGGTCAGTGCATTCCAGCGCGACCAGACGCTGATTCGCGTGAT 6001
||||||||| ||| ||||||||||||| |||||||| |||||||||||| | |||||
Sbjct 79 GGACGCCGAAGGCAACATGGTCAGTGCGTTCCAGCGTGACCAGACGCTGGTCAAAGTGAT 20
Query 6002 CGCAAAGAACGACTTCGGC 6020
||| ||| |||||||||||
Sbjct 19 CGCCAAGCACGACTTCGGC 1
>seq979876
Length=1411
Score = 134 bits (148), Expect = 5e-27
Identities = 119/149 (80%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 33764 GCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAG 33823
||| ||||||||||| ||||| || || |||||||||||||| ||||| |||||||||||
Sbjct 1263 GCTCACCCGCCAGCCCACAATGCGCCGCGCGAACACGTCGATGACGAACGCCACGTACAG 1322
Query 33824 CCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTC 33883
|||||| ||||| || |||||| || || || |||||||| | ||||| || || ||
Sbjct 1323 CCAGCCCTGCCAAGTGCTGACATAAGTGAAGTCGGACACCCACTGTTGATTGGGCCGCTC 1382
Query 33884 AGCCTTGAACTGCCGGTTGACTCGGTCCA 33912
|| |||||| || | ||| |||||||
Sbjct 1383 GGCTTTGAACACTCGCTGGACCCGGTCCA 1411
>seq20158
Length=683
Score = 123 bits (136), Expect = 8e-24
Identities = 209/301 (69%), Gaps = 14/301 (5%)
Strand=Plus/Plus
Query 33315 CTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCG 33374
||||| ||| |||||| || ||||||| ||||| | ||| |||||| ||
Sbjct 395 CTGAATCGCCCCGGGATTCCCGGAGGCTCGTTGGCGTGAGT---------CACGTCTCCG 445
Query 33375 GCATTT-CTGA-GTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGA 33432
| | ||| | ||| |||||||| || || ||||| ||||| |||| |||||||
Sbjct 446 TGACGTGCTGTCGCTGTTGATAGTAGTTCGCTTCGGCTTCGGCGGGTAGGATGTAGCCGA 505
Query 33433 GCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGA 33492
|| | | | || || | ||||||||||| | ||||| |||||| |||||||| |
Sbjct 506 TCGATCCGAGTAGTCGCCGGTGGTTGTACCAATCCACCCAGCGCAGCGTGGCCAGTTCCA 565
Query 33493 CGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGT 33552
||| | | ||| || || ||||| | | || | ||| |||| || |
Sbjct 566 GCTCTTCGCGACTGCGCCA---GGAACGACGATGCACGACCTCGGCCTTTTACAACCCAT 622
Query 33553 TGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGA 33612
||||||||||||||||||| |||||||||||||| || ||| ||||| || |||||||
Sbjct 623 TGATCGTTTCGGCCAGCGCGTTGTCGTAGCTGTCTCCGACGCTTCCGACAGACGGCTCGA 682
Query 33613 T 33613
|
Sbjct 683 T 683
>seq2072468
Length=291
Score = 107 bits (118), Expect = 6e-19
Identities = 173/249 (69%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 17616 CGACGGCGGGTCGTATACGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCT 17675
||| || || | ||| |||||||| || | || ||||||||||||| || |||
Sbjct 287 CGATGGAGGCGCCTATCAGCAGGTGCCGGTGGACGCAGTCGACGGCAAGACCACCACGCG 228
Query 17676 CTACGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCGAAAAACGGCTGGCTGATCCGTGT 17735
|||||||||||||| ||| ||||| ||||| ||| | | ||||||| ||| || ||
Sbjct 227 CTACGAGCGCTCGCTTCGCATCGATTTGCCGGACGCCACCACTGGCTGGCAGATACGCGT 168
Query 17736 GCGCCGTATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAAGC 17795
|||||| | ||||||||| | |||| | |||||||||| | || | | |
Sbjct 167 GCGCCGCCTGACGCCGAACCAGAACACCAACAAGATCGCCGACACCATGCTGGTGGCCGG 108
Query 17796 GATCACCGAAATCATCGATCGGAAGCTTCGCTATCCGATGACGGCGCTCGTCGGCATGAC 17855
||| || ||||||| ||||| |||||||||| || ||||| || |||
Sbjct 107 TTGCACAGAGGTCATCGACGCCAAGCTGCGCTATCCGAATACTGCGCTGCTCTACATCGA 48
Query 17856 GTTCGACGC 17864
||||||||
Sbjct 47 ATTCGACGC 39
>seq4607
Length=217
Score = 93.3 bits (102), Expect = 1e-14
Identities = 155/222 (70%), Gaps = 14/222 (6%)
Strand=Plus/Minus
Query 33603 GAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGAC 33662
|| |||||||||||||| || ||||| || ||| |||||||||| || ||||| ||
Sbjct 217 GACGGCTCGATGCCGGCTTCGGCCAGGCGCTCGGTGTAGCGAATCGACACATATTGCGAT 158
Query 33663 CCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCT 33722
|| | |||| ||||| | || | | |||||||| | || |||| |||||
Sbjct 157 CCGCGGTCGCTGTGATGCACCAGCG------CGTCGCCCGGACGCCGCGCGTGAAGCGCC 104
Query 33723 TGTTCAAGTGCATCCAGAACAAA----GTCCGTGGTCATCGACGAGCTGACCCGCCAGCC 33778
||||| || ||||| || || || ||| || | | ||||||| | | ||||||
Sbjct 103 TGTTCGAGCGCATCGAGCACGAATTGGGTCTGTTGGC-TCGACGA---CAGCTTCCAGCC 48
Query 33779 AACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTA 33820
|| || || || ||| | |||||||| | ||| || |||||
Sbjct 47 GACGATTCGCCGTGCGTAGACGTCGATGATGAAGGCGACGTA 6
>seq54357
Length=392
Score = 89.7 bits (98), Expect = 2e-13
Identities = 109/147 (74%), Gaps = 4/147 (3%)
Strand=Plus/Minus
Query 4032 GCGGTCGCAGATCCGGCGGTCGAACATATCGTGCTCGACATCGACAGCAACGGCGGGAGC 4091
||||| || |||||| ||| |||| |||||||| |||||||||||| || |||
Sbjct 149 GCGGTAGCCGATCCGATGGTTGAACGCATCGTGCTGGACATCGACAGCCCTGGTGGGTCT 90
Query 4092 GCGACCGGCGCGTTCGAGCTGGCGGACGACATCCGCGC--TGCCTCGTTGGTGAAGCCGA 4149
|| |||||| ||||| ||||| | ||| || ||||| || ||| | |||||| |
Sbjct 89 GCTGTCGGCGCTTTCGAACTGGCCGCCGATATTCGCGCCATGGCTC--AGCAGAAGCCCA 32
Query 4150 TCACCGCAATCGTCAACTTCTCGGCTT 4176
|||||| ||||| |||||| |||||
Sbjct 31 TCACCGGCATCGTTAACTTCATGGCTT 5
>seq833845
Length=260
Score = 80.6 bits (88), Expect = 9e-11
Identities = 124/174 (71%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 22918 ATGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTG-ACCACATCAT 22976
||| | || ||||| ||| ||||| ||||||||||| || || ||| | ||| ||
Sbjct 174 ATGCCCAAGCCCATCATTTCCTGGCCGGGCGGCAAGCGCCGCCT-ACTGAAGCACCTCTA 116
Query 22977 CCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTA 23036
|||| ||| || | || ||||| |||||||||| ||||| ||||| || ||| |
Sbjct 115 TCCGCACTTCCCAACCCATGACTGCTACGTCGAGGCATTCGCCGGCGGCGCCGCGTCGCT 56
Query 23037 CTTCATGCGACCG---CCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGA 23087
| ||||| ||| || ||| | | || || ||||||| |||||||||||
Sbjct 55 GCTGATGCGGCCGTATCCGGCCCAGATGGAAGTCCTCAACGACATCAACGGCGA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 166460655706270
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