Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq4594 80.6 1e-10 >seq4594 Length=230 Score = 80.6 bits (88), Expect = 1e-10 Identities = 86/110 (78%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 28132 GGAGCCAGCCGGGTTCTCGATCGAGATATCCAACCC-GCCA-AGGCGGATGCGGCCGACC 28189 || ||| ||||| ||||||||||| | ||||| || |||| | ||| ||| ||| | Sbjct 45 GGTGCCGGCCGGATTCTCGATCGACACATCCAGGCCAGCCACACGCGCATG--GCCCTTC 102 Query 28190 TTGTAGTTGCCGGCTTCCTTCTGTGCCTGAGTGGGCTCGGGCAGGGCGTT 28239 |||||||||||||| |||||||| |||| || |||||||| | ||||| Sbjct 103 TTGTAGTTGCCGGCCTCCTTCTGCGCCTCGGTCGGCTCGGGACGCGCGTT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179079019464036