Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq30681 138 3e-28 >seq30681 Length=360 Score = 138 bits (152), Expect = 3e-28 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 30557 CATCACAAGCAAGTACGGACGCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTCCTGG 30616 ||| || ||||||||||| || |||||||| || ||||| || || ||||| || || Sbjct 48 CATTACCAGCAAGTACGGCCGGCACAAGCTTGCCAATGACGGCACGAACTTTGGCCCAGG 107 Query 30617 GCAGGCGATTGTTACTCCTGCCGTTATCAAAGGGGAGCTTCTGGCGACATATCGTCAGAT 30676 ||||| ||||| || || ||| ||| || ||| | | || | ||| | || | Sbjct 108 CCAGGCCATTGTCACGCCGAACGTGATCCGGGGCGAGTTGATTGCCGCCTATGGCGAGCT 167 Query 30677 GGAGCGTGCCGGTATTGTGGAAAATTACGATCTGTTTAAACAGTATCTGATAGTTGAGCG 30736 ||||||||||||| | ||||| || || |||| || | ||||| || ||||| Sbjct 168 GGAGCGTGCCGGTTTGGTGGAGAACGCAGAAATGTTCAAGGCCAACCTGATCGTGGAGCG 227 Query 30737 TGATGCGGATAACCCGAACCGACTGAACACGCTGTTCCCGCCGGATTATGTTAACCAGTT 30796 ||| || ||||||||||| ||||||| ||||||||||||||| || || ||||| Sbjct 228 TGACCCGAGCAACCCGAACCGCCTGAACATCCTGTTCCCGCCGGATCTGGTGAATCAGTT 287 Query 30797 ACGTGTCTTTGCGGTG 30812 || || |||||| || Sbjct 288 GCGCGTGTTTGCGCTG 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132759668356194