Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq878454 96.9 3e-15 seq362679 95.1 1e-14 seq19311 95.1 1e-14 seq218242 93.3 4e-14 seq1991079 91.5 1e-13 seq839203 87.8 2e-12 seq11307 87.8 2e-12 >seq878454 Length=5435 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| || || |||| || |||||||| || || Sbjct 802 GTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 743 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||| || || || |||||||| || || ||| ||| || Sbjct 742 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGGATCTTTGCCTTC 683 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||||| ||| | |||||||| |||| || Sbjct 682 ACGTTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 623 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 622 TTGACGAAGATCTGCATA 605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| || |||||||| || ||| Sbjct 574 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 515 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || ||||| ||||| || ||||| ||| || || Sbjct 514 GCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 455 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||||| ||| | ||||||||||| | || Sbjct 454 ACGTTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 395 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 394 TTGACGAAGATCTGCAT 378 >seq362679 Length=1828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||||||||||| ||||| Sbjct 1720 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCTTCGAGCTGCTTACCG 1661 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 1660 GCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1601 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||| | ||| | ||||||||||| | || Sbjct 1600 ACGTTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 1541 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 1540 TTAACAAATATCTGCAT 1524 >seq19311 Length=2760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| ||| || |||| || || ||||| || ||| Sbjct 2760 GTGGACTCCTTCTGGATGTTATAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 2701 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 2700 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 2641 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||| | ||| | ||||||||||||| || Sbjct 2640 ACGTTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 2581 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 2580 TTCACAAAGATCTGCAT 2564 >seq218242 Length=2478 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || || | || || || |||||||| Sbjct 1217 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCGAGCTG 1158 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| |||| ||||| ||||| || ||||| ||||| || ||||| ||| || Sbjct 1157 CTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 1098 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| | | ||||||||||| ||| | ||||| || || Sbjct 1097 GGACTTGACATTGTCGATTGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 1038 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || || ||||| Sbjct 1037 CAATGTCTTCACAAAGATCTGCAT 1014 >seq1991079 Length=1418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC- 139593 ||||| || || | ||| | || ||||||| || ||||| || || |||||||| || Sbjct 1233 TGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCC 1174 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 ||| | |||| || || ||||| ||||||||| |||| || || |||| || || Sbjct 1173 GCT-AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTAGTCCGG 1115 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| || || | | || | ||||| | | ||| Sbjct 1114 GGG-ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGATGACTC 1056 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | ||| | ||||||||||| | || || || ||||| ||||| Sbjct 1055 CACCTCCATGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 1005 >seq839203 Length=7618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||||| ||||| || |||||||| || ||||| |||||| Sbjct 910 GCCACCACGGAGTCGGAGAACTAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGGC 969 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || || || || |||||| |||||| || || || || || || Sbjct 970 TAGGGTGCGACCATCCTCAAGTTGCTTGCCAGCAAAGATCAACCGCTGTTGGTCCGGGGG 1029 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || ||| | | || | ||||||| | ||| || Sbjct 1030 -ATGCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCAAC 1088 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||||||||| | || || ||||| || ||||| Sbjct 1089 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1136 >seq11307 Length=2396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||| | || ||||| || || ||||| || || Sbjct 21 GCCTCCGCGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGC 80 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || ||| ||| |||||||| || ||||| |||| ||||| ||||| || || || Sbjct 81 GAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGCGG 140 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| || || | | || | ||||| | | |||||| Sbjct 141 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCAC 200 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| |||| || || || || || ||||| Sbjct 201 CTCAAGGGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483179351479200