Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq957357 107 3e-18 seq60244 96.9 5e-15 >seq957357 Length=1670 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||||| || | ||| |||| ||| | || | ||||| |||| || || Sbjct 1516 TCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAACATAGGAACTATCCC 1457 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || |||||||| ||| | |||||||| || || || Sbjct 1456 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGA 1397 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 1396 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 1337 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | || |||||||| Sbjct 1336 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 1295 >seq60244 Length=9325 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 747 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 806 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 807 CCCGGCATGAGCCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 865 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || ||| ||||| || Sbjct 866 GATGCCCTCGACGCAGGCGAAGGCGAC 892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699612656777640