Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq60244 158 2e-33 >seq60244 Length=9325 Score = 158 bits (174), Expect = 2e-33 Identities = 579/891 (65%), Gaps = 38/891 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| |||||||| Sbjct 1326 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 1267 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || | | Sbjct 1266 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACTCT-- 1209 Query 125113 CTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || ||| ||||| | || || || || | | |||||||| |||| |||||| || Sbjct 1208 CTCCAACGACGAGCGCCACTTCATCTCCCATGTGCTCGCCTTCTTCGCCGCCTCCGACGG 1149 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| ||| || || | | ||| | || || || | | |||| Sbjct 1148 CATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCT-GACGTGCAGGTCGCCGAGGCCA 1090 Query 125230 CGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 | ||||| ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 1089 GG-GCTTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTG 1031 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344 || || || | ||||| ||||| | |||| || || ||||| ||| || Sbjct 1030 CTCATAGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 975 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 |||||| | || | | || ||||| | |||| | || |||||||| | || Sbjct 974 CGACACCATCCCCGCCGTTCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGG 915 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 || ||||| |||| | | || || |||||| ||| |||||||||||||| | Sbjct 914 GGAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCT 859 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || |||| ||||||| ||||| |||||||| || |||||||| || || || Sbjct 858 CGGGCTCCTTCTGCG-CCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCGGGCCTCACC 800 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 799 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTC 740 Query 125583 TTTCGCAACTATCTGCGTCCCGAG-TGCA-GA-TCCAGCGATGAAAAGGTCATCAACATT 125639 | | || ||||| | || || | || ||| || ||| || | || Sbjct 739 T---ACGACATCCTGCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATC 692 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATG 125699 || |||| |||||| || || ||||| | ||| | || || | | Sbjct 691 GTCTCCGAGGCCGTGGACATTGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTC 632 Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 | ||||||||| || | || ||| || ||||||| ||||| |||||||| || || || Sbjct 631 GTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCAGACCGCCTGCTC 572 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | | || || |||| | |||||||||| || || || || | ||| | Sbjct 571 ATGGCGCTGGGCTGCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTC 512 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||| ||||| ||||||||| ||| |||||||| Sbjct 511 ATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721811104340760