Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq30681 152 1e-32 >seq30681 Length=360 Score = 152 bits (168), Expect = 1e-32 Identities = 203/280 (73%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 8900 ATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTGGT 8959 |||||||| || ||||| || || || ||||| ||||| || ||| || || | || Sbjct 49 ATTACCAGCAAGTACGGCCGGCACAAGCTTGCCAATGACGGCACGAACTTTGGCCCAGGC 108 Query 8960 CAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGATG 9019 ||||||||||||||||| ||| ||||| || ||| || | | ||| || || || Sbjct 109 CAGGCCATTGTCACGCCGAACGTGATCCGGGGCGAGTTGATTGCCGCCTATGGCGAGCTG 168 Query 9020 GAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAG--CAACATCTGATAGTGGAGC 9077 ||||| | || | ||||| ||| || ||||| || |||| ||||| ||||||| Sbjct 169 GAGCGTGCCGGTTTGGTGGAGAACGCAGAAATGTTCAAGGCCAAC--CTGATCGTGGAGC 226 Query 9078 GTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 9137 || || ||| | | ||||||||||| | | ||||| ||||| ||| || ||||||| Sbjct 227 GTGACCCGAGCAACCCGAACCGCCTGAACATCCTGTTCCCGCCGGATCTGGTGAATCAGT 286 Query 9138 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 | || |||||||| |||| | ||||||||| |||||| Sbjct 287 TGCGCGTGTTTGCGCTGCTGTATCAGTTCCGTTCGCAGTA 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125188025893582