Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq55408 123 4e-23 seq3027 87.8 3e-12 seq30515 84.2 4e-11 >seq55408 Length=251 Score = 123 bits (136), Expect = 4e-23 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 271733 TTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTG 271792 || ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| ||| Sbjct 201 TTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTTG 142 Query 271793 CTCTACCGACTGAGCTATCACGGAATTAAAT 271823 ||||||||||||||||||||||||| || || Sbjct 141 CTCTACCGACTGAGCTATCACGGAACTACAT 111 >seq3027 Length=259 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | |||||| |||||| ||||||| || ||||||| || | ||||| || Sbjct 236 ATGGTGGGCCCTGTAGGACTCGAACCTACGACCAATCGGTTATGAGCCGACCGCTCTGAC 177 Query 272931 CAACTGAGCTATAGGCCC 272948 ||||||||||| ||||| Sbjct 176 CAACTGAGCTAAGGGCCC 159 >seq30515 Length=620 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 266721 TGGTGCCGCCACTCCGAATCGAACGGAGGACCTACGCATTACAAGTGCGTTGCTCTACCT 266780 ||||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||| Sbjct 513 TGGTGCCGCTTGTCCGAATCGAACGGACGACCTACTGATTACAAATCAGTTGCTCTACCG 572 Query 266781 AGCTGAGCTATAGCGGCG 266798 | |||||||| ||||||| Sbjct 573 A-CTGAGCTAAAGCGGCG 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 873643872684240