Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq18201 343 4e-90 >seq18201 Length=11482 Score = 343 bits (380), Expect = 4e-90 Identities = 453/619 (73%), Gaps = 8/619 (1%) Strand=Plus/Plus Query 843 CCAGCCGCTGATGCTGGCCCGCGCATCCGGCCACGGCATCGGTAAATCTGCTTTCATCTC 902 |||||||||| | ||| ||| |||| ||||| ||||| || || || | ||| Sbjct 215 CCAGCCGCTGCGCATCGCCGTCGCGGCCGGTCACGGTATCGGCAAGTCCGCGCTGATCGG 274 Query 903 GATGCTGATTAACTGGGGCATGTCCACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCAA 962 ||||| | |||||| ||| |||||||||||||||| | |||||||||||||| Sbjct 275 CATGCTCACCGGCTGGGGGATGGACACCTGCGAGGACTGCCGCATCGTGGTGACCGCCAA 334 Query 963 CACCGACAACCAGTTGCGCACCAAGACCTGGCCTGAAATCATCAAATGGTCAAATCTGGC 1022 |||||| |||| ||||||| ||||||||||| |||||| || ||| ||| | Sbjct 335 CACCGAGGGCCAGCTGCGCACGAAGACCTGGCCGGAAATCTCGAAGTGGCGGCGCCTGAC 394 Query 1023 TATCACGAAAGAGTGGTTCACC-TGCACCGCTACCGCGATGTACAGCAATGATCCCGGCC 1081 ||||| | | |||| | | ||| | || | |||| ||| || || || |||| Sbjct 395 CATCACCGAGCACTGGTGGAACGTGC-CGGCCATGTCGATCTACTCGAACGAGCCAGGCC 453 Query 1082 ATGACAAACGCTGGCGTGCCGATGCTATCCCATGGTCTGAGCACAACACAGAAGCATTCG 1141 || || ||||||| ||||| || | || ||| ||||||||||| || || |||| Sbjct 454 GCGAGAAGAGCTGGCGCGCCGACGCCACGCCCTGGAGCGAGCACAACACCGAGGCGTTCG 513 Query 1142 CAGGGCTGCACAACGAGCGCAAGCGCATCATCGTGGTATTCGACGAAGCATCCAACATTG 1201 | || ||||||||| || |||||||||||||||| | | |||||| || || || || | Sbjct 514 CCGGCCTGCACAACAAGGGCAAGCGCATCATCGTCATCTACGACGAGGCCTCGAAGATCG 573 Query 1202 CCGATCTGGTGTGGGAAGTAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCT 1261 |||| ||| |||||||| | || ||||| || || ||||| |||||||||||||||| Sbjct 574 CCGACAAGGTCTGGGAAGTCACCGACGGCGCACTTACCGACGAGGACACCGAAATCATCT 633 Query 1262 GGGTGGCGTTCGGTAACCCGACGCGTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGT 1321 || | || ||||| |||||||||| ||| || || ||||| || || |||||| || Sbjct 634 GGATCGCCTTCGGGAACCCGACGCAGTCCACAGGCCGCTTCCGCGAGTGCTTCCGCCGGT 693 Query 1322 ACAAACACCGCTGGAAGTG-CGCG-CAGATTGACAGCCGCACCGTTGAAGGCACTAACAA 1379 || |||| |||| ||| |||| || || |||||||||||||| || ||||| ||||| Sbjct 694 ACCGCCACCTCTGG--GTGACGCGCCACATCGACAGCCGCACCGTCGAGGGCACGAACAA 751 Query 1380 GCAGCAGTTGCAGAAGTGGGTAGACGAC-TACGGCGAGGAAAGCGACTTTGTTAAAGTTC 1438 |||| | || | ||| || | |||| |||||||||| |||||| | || || || | Sbjct 752 GCAGTACCTGGACGAGTTCGT-GGCGACGCACGGCGAGGACAGCGACATCGTCAAGGTCC 810 Query 1439 GTGTGCGCGGAATATTCCC 1457 | |||||||| | ||||| Sbjct 811 GCGTGCGCGGCCTGTTCCC 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123696168887346